Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 RAD21-201ENST00000297338 3749 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.093e-6■□□□□ 11.1
LIN28BQ6ZN17 TLN1-202ENST00000378192 1693 ntTSL 212.61□□□□□ -0.392e-6■□□□□ 11.1
LIN28BQ6ZN17 ETF1-202ENST00000499810 3874 ntTSL 1 (best) BASIC12.5□□□□□ -0.417e-6■□□□□ 11.1
LIN28BQ6ZN17 ERGIC3-207ENST00000438317 590 ntTSL 311.27□□□□□ -0.617e-11■□□□□ 11.1
LIN28BQ6ZN17 ETF1-201ENST00000360541 3742 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.657e-6■□□□□ 11.1
LIN28BQ6ZN17 AC068547.1-203ENST00000637559 1373 ntAPPRIS P5 TSL 5 BASIC10.74□□□□□ -0.697e-11■□□□□ 11.1
LIN28BQ6ZN17 NUP205-209ENST00000491089 553 ntTSL 29.34□□□□□ -0.917e-6■□□□□ 11.1
LIN28BQ6ZN17 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC5.45□□□□□ -1.547e-6■□□□□ 11.1
LIN28BQ6ZN17 RARS-208ENST00000522834 559 ntTSL 517.02■□□□□ 0.326e-6■□□□□ 11.1
LIN28BQ6ZN17 RARS-207ENST00000521939 678 ntTSL 215.02■□□□□ -06e-6■□□□□ 11.1
LIN28BQ6ZN17 EIF3D-209ENST00000462641 887 ntTSL 212.74□□□□□ -0.373e-11■□□□□ 11.1
LIN28BQ6ZN17 EIF3D-211ENST00000478547 452 ntTSL 38.46□□□□□ -1.063e-11■□□□□ 11.1
LIN28BQ6ZN17 RARS-203ENST00000519346 945 ntTSL 35.48□□□□□ -1.536e-6■□□□□ 11.1
LIN28BQ6ZN17 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.87■□□□□ 0.455e-8■□□□□ 11
LIN28BQ6ZN17 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.235e-8■□□□□ 11
LIN28BQ6ZN17 FST-205ENST00000504226 705 ntTSL 311.03□□□□□ -0.645e-8■□□□□ 11
LIN28BQ6ZN17 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC23.56■■□□□ 1.363e-6■□□□□ 11
LIN28BQ6ZN17 LSM8-201ENST00000249299 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.23e-6■□□□□ 11
LIN28BQ6ZN17 LSM8-204ENST00000424702 4030 ntTSL 1 (best) BASIC7.6□□□□□ -1.193e-6■□□□□ 11
LIN28BQ6ZN17 EIF3K-207ENST00000588422 507 ntTSL 213.17□□□□□ -0.34e-8■□□□□ 11
LIN28BQ6ZN17 EIF3K-205ENST00000586932 667 ntTSL 212.95□□□□□ -0.344e-8■□□□□ 11
LIN28BQ6ZN17 EIF3K-204ENST00000586513 493 ntTSL 512.52□□□□□ -0.414e-8■□□□□ 11
LIN28BQ6ZN17 EIF3K-212ENST00000593062 704 ntTSL 211.03□□□□□ -0.644e-8■□□□□ 11
LIN28BQ6ZN17 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.89■□□□□ 0.452e-9■□□□□ 11
LIN28BQ6ZN17 ACTR3-202ENST00000415792 676 ntTSL 3 BASIC12.97□□□□□ -0.331e-7■□□□□ 11
LIN28BQ6ZN17 AP000781.2-203ENST00000528835 533 ntTSL 319.3■□□□□ 0.685e-8■□□□□ 11
LIN28BQ6ZN17 DYRK1A-207ENST00000462274 1189 ntTSL 1 (best)29.14■■■□□ 2.263e-6■□□□□ 11
LIN28BQ6ZN17 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC15.6■□□□□ 0.093e-6■□□□□ 11
LIN28BQ6ZN17 DYRK1A-204ENST00000398960 2422 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.763e-6■□□□□ 11
LIN28BQ6ZN17 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC7.55□□□□□ -1.23e-6■□□□□ 11
LIN28BQ6ZN17 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.6□□□□□ -1.513e-6■□□□□ 11
LIN28BQ6ZN17 DYRK1A-205ENST00000426672 519 ntTSL 53.4□□□□□ -1.873e-6■□□□□ 11
LIN28BQ6ZN17 KPNB1-210ENST00000580573 556 ntTSL 38.43□□□□□ -1.064e-9■□□□□ 11
LIN28BQ6ZN17 SF3B3-214ENST00000572365 575 ntTSL 46.19□□□□□ -1.429e-8■□□□□ 11
LIN28BQ6ZN17 ENPP1-203ENST00000486853 732 ntTSL 233.72■■■□□ 2.997e-7■□□□□ 11
LIN28BQ6ZN17 HMGN1-219ENST00000491183 527 ntTSL 220.55■□□□□ 0.884e-8■□□□□ 11
LIN28BQ6ZN17 HMGN1-212ENST00000479586 841 ntTSL 220.46■□□□□ 0.874e-8■□□□□ 11
LIN28BQ6ZN17 HMGN1-209ENST00000463631 583 ntTSL 320.07■□□□□ 0.84e-8■□□□□ 11
LIN28BQ6ZN17 HMGN1-214ENST00000482733 701 ntTSL 218.45■□□□□ 0.544e-8■□□□□ 11
LIN28BQ6ZN17 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC7.71□□□□□ -1.187e-9■□□□□ 11
LIN28BQ6ZN17 CYP51A1-202ENST00000422867 747 ntTSL 35.39□□□□□ -1.557e-9■□□□□ 11
LIN28BQ6ZN17 CUTA-208ENST00000482684 837 ntTSL 1 (best)22.42■■□□□ 1.182e-8■□□□□ 11
LIN28BQ6ZN17 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC20.91■□□□□ 0.942e-8■□□□□ 11
LIN28BQ6ZN17 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.762e-8■□□□□ 11
LIN28BQ6ZN17 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.85■□□□□ 0.612e-8■□□□□ 11
LIN28BQ6ZN17 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.482e-8■□□□□ 11
LIN28BQ6ZN17 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.482e-8■□□□□ 11
LIN28BQ6ZN17 STAG2-212ENST00000458176 845 ntTSL 316.17■□□□□ 0.182e-8■□□□□ 11
LIN28BQ6ZN17 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.162e-8■□□□□ 11
LIN28BQ6ZN17 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC15.76■□□□□ 0.112e-8■□□□□ 11
LIN28BQ6ZN17 CUTA-201ENST00000374484 658 ntTSL 315.38■□□□□ 0.052e-8■□□□□ 11
LIN28BQ6ZN17 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC15.38■□□□□ 0.052e-8■□□□□ 11
LIN28BQ6ZN17 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.052e-8■□□□□ 11
LIN28BQ6ZN17 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.252e-8■□□□□ 11
LIN28BQ6ZN17 CUTA-206ENST00000465956 961 ntTSL 212.8□□□□□ -0.362e-8■□□□□ 11
LIN28BQ6ZN17 CUTA-211ENST00000488478 676 ntTSL 5 BASIC11.78□□□□□ -0.522e-8■□□□□ 11
LIN28BQ6ZN17 STAG2-218ENST00000483575 864 ntTSL 511.6□□□□□ -0.552e-8■□□□□ 11
LIN28BQ6ZN17 CUTA-205ENST00000462802 1054 ntTSL 1 (best)10.64□□□□□ -0.712e-8■□□□□ 11
LIN28BQ6ZN17 CUTA-209ENST00000487637 1378 ntTSL 210.51□□□□□ -0.732e-8■□□□□ 11
LIN28BQ6ZN17 CUTA-213ENST00000494751 731 ntTSL 5 BASIC10.44□□□□□ -0.742e-8■□□□□ 11
LIN28BQ6ZN17 CUTA-214ENST00000607266 661 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.772e-8■□□□□ 11
LIN28BQ6ZN17 PSMD13-210ENST00000529679 507 ntTSL 210.25□□□□□ -0.772e-8■□□□□ 11
LIN28BQ6ZN17 CUTA-207ENST00000479249 562 ntTSL 39.44□□□□□ -0.92e-8■□□□□ 11
LIN28BQ6ZN17 STAG2-211ENST00000455404 2089 ntTSL 59.38□□□□□ -0.912e-8■□□□□ 11
LIN28BQ6ZN17 STAG2-209ENST00000435103 742 ntTSL 58.26□□□□□ -1.092e-8■□□□□ 11
LIN28BQ6ZN17 DDT-205ENST00000428792 333 ntTSL 28□□□□□ -1.132e-8■□□□□ 11
LIN28BQ6ZN17 STAG2-216ENST00000471107 709 ntTSL 57.63□□□□□ -1.192e-8■□□□□ 11
LIN28BQ6ZN17 STAG2-214ENST00000466748 873 ntTSL 56.93□□□□□ -1.32e-8■□□□□ 11
LIN28BQ6ZN17 MALSU1-203ENST00000476623 479 ntTSL 24.91□□□□□ -1.622e-8■□□□□ 11
LIN28BQ6ZN17 STAG2-208ENST00000428941 678 ntTSL 34.4□□□□□ -1.712e-8■□□□□ 11
LIN28BQ6ZN17 STAG2-210ENST00000435215 798 ntTSL 54.14□□□□□ -1.752e-8■□□□□ 11
LIN28BQ6ZN17 STAG2-207ENST00000394478 676 ntTSL 53.52□□□□□ -1.852e-8■□□□□ 11
LIN28BQ6ZN17 GMPR-202ENST00000540478 793 ntTSL 213.02□□□□□ -0.335e-8■□□□□ 11
LIN28BQ6ZN17 GMPR-204ENST00000544145 750 ntTSL 37.74□□□□□ -1.175e-8■□□□□ 11
LIN28BQ6ZN17 OAZ1-206ENST00000589739 657 ntTSL 219.59■□□□□ 0.732e-8■□□□□ 11
LIN28BQ6ZN17 NCOR1-206ENST00000411510 1883 ntTSL 1 (best)24.22■■□□□ 1.477e-6■□□□□ 11
LIN28BQ6ZN17 NCOR1-211ENST00000460276 1848 ntTSL 224.21■■□□□ 1.477e-6■□□□□ 11
LIN28BQ6ZN17 C10orf10-203ENST00000496638 868 ntTSL 324.1■■□□□ 1.457e-6■□□□□ 11
LIN28BQ6ZN17 NCOR1-221ENST00000582357 1877 ntTSL 1 (best)21.18■□□□□ 0.987e-6■□□□□ 11
LIN28BQ6ZN17 NCOR1-209ENST00000436828 1969 ntTSL 1 (best)18.94■□□□□ 0.627e-6■□□□□ 11
LIN28BQ6ZN17 TSN-207ENST00000483698 555 ntTSL 218.54■□□□□ 0.567e-6■□□□□ 11
LIN28BQ6ZN17 AKAP1-209ENST00000572560 442 ntTSL 318.45■□□□□ 0.547e-6■□□□□ 11
LIN28BQ6ZN17 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.424e-10■□□□□ 11
LIN28BQ6ZN17 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.357e-6■□□□□ 11
LIN28BQ6ZN17 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.344e-10■□□□□ 11
LIN28BQ6ZN17 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.317e-6■□□□□ 11
LIN28BQ6ZN17 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.137e-6■□□□□ 11
LIN28BQ6ZN17 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.094e-10■□□□□ 11
LIN28BQ6ZN17 AKAP1-214ENST00000575032 570 ntTSL 314.37□□□□□ -0.117e-6■□□□□ 11
LIN28BQ6ZN17 PHF3-204ENST00000481385 2787 ntTSL 213.98□□□□□ -0.177e-6■□□□□ 11
LIN28BQ6ZN17 CHKA-203ENST00000525155 1201 ntTSL 513.94□□□□□ -0.187e-6■□□□□ 11
LIN28BQ6ZN17 TSN-206ENST00000481818 421 ntTSL 313.71□□□□□ -0.217e-6■□□□□ 11
LIN28BQ6ZN17 EEF1B2-205ENST00000429769 912 ntTSL 513.39□□□□□ -0.274e-10■□□□□ 11
LIN28BQ6ZN17 AKAP1-212ENST00000573326 1580 ntTSL 512.72□□□□□ -0.377e-6■□□□□ 11
LIN28BQ6ZN17 PHF3-205ENST00000494284 2854 ntTSL 212.48□□□□□ -0.417e-6■□□□□ 11
LIN28BQ6ZN17 GLDC-204ENST00000477960 762 ntTSL 310.93□□□□□ -0.667e-6■□□□□ 11
LIN28BQ6ZN17 TGFBR3-208ENST00000529608 785 ntTSL 59.98□□□□□ -0.817e-6■□□□□ 11
LIN28BQ6ZN17 CHKA-207ENST00000533728 662 ntTSL 29.71□□□□□ -0.867e-6■□□□□ 11
LIN28BQ6ZN17 GLDC-214ENST00000639461 2674 ntTSL 28.94□□□□□ -0.987e-6■□□□□ 11
LIN28BQ6ZN17 FOXN3-202ENST00000345097 7832 ntAPPRIS ALT1 TSL 1 (best) BASIC8.87□□□□□ -0.997e-6■□□□□ 11
Retrieved 100 of 21,972 protein–RNA pairs in 567 ms