RNA–Protein interactions for RNA: ENST00000249299.6

LSM8-201, Transcript of LSM8 homolog, U6 small nuclear RNA associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM8, Length 1,305 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM8-201ENST00000249299 NISCHQ9Y2I1 1504 aa30.07■■■□□ 2.4
LSM8-201ENST00000249299 AEBP2Q6ZN18 517 aaPredicted RBP29.76■■■□□ 2.36
LSM8-201ENST00000249299 CHIC1Q5VXU3 224 aa28.94■■■□□ 2.22
LSM8-201ENST00000249299 CCDC180Q9P1Z9 1646 aa26.42■■□□□ 1.82
LSM8-201ENST00000249299 PHF23Q9BUL5 403 aaPredicted RBP25.58■■□□□ 1.69
LSM8-201ENST00000249299 ZCCHC6Q5VYS8 1495 aaKnown RBP25.2■■□□□ 1.63
LSM8-201ENST00000249299 ABCC9O60706 1549 aa25.13■■□□□ 1.61
LSM8-201ENST00000249299 SENP3Q9H4L4 574 aaPredicted RBP25.04■■□□□ 1.6
LSM8-201ENST00000249299 DCAF1Q9Y4B6 1507 aa25.03■■□□□ 1.6
LSM8-201ENST00000249299 MYO15BQ96JP2 1530 aa24.92■■□□□ 1.58
LSM8-201ENST00000249299 DCAF8L2P0C7V8 631 aa24.75■■□□□ 1.55
LSM8-201ENST00000249299 NACADO15069 1562 aa24.74■■□□□ 1.55
LSM8-201ENST00000249299 RB1CC1Q8TDY2 1594 aa24.56■■□□□ 1.52
LSM8-201ENST00000249299 SCRIBQ14160 1630 aa24.04■■□□□ 1.44
LSM8-201ENST00000249299 SHROOM4Q9ULL8 1493 aa24■■□□□ 1.43
LSM8-201ENST00000249299 UNC13AQ9UPW8 1703 aa23.81■■□□□ 1.4
LSM8-201ENST00000249299 BICRAQ9NZM4 1560 aa23.73■■□□□ 1.39
LSM8-201ENST00000249299 PABPN1Q86U42 306 aaKnown RBP eCLIP23.59■■□□□ 1.37
LSM8-201ENST00000249299 PLPPR3Q6T4P5 718 aa23.41■■□□□ 1.34
LSM8-201ENST00000249299 FOXD1Q16676 465 aa23.39■■□□□ 1.34
LSM8-201ENST00000249299 BAZ1AQ9NRL2 1556 aaPredicted RBP23.28■■□□□ 1.32
LSM8-201ENST00000249299 CECR2Q9BXF3 1484 aa23.28■■□□□ 1.32
LSM8-201ENST00000249299 RSF1Q96T23 1441 aaPredicted RBP23.17■■□□□ 1.3
LSM8-201ENST00000249299 SMARCA4P51532 1647 aa23.14■■□□□ 1.3
LSM8-201ENST00000249299 MROH2BQ7Z745 1585 aa23.13■■□□□ 1.29
LSM8-201ENST00000249299 EIF4G1Q04637 1599 aaKnown RBP23.07■■□□□ 1.28
LSM8-201ENST00000249299 PEG3Q9GZU2 1588 aa23■■□□□ 1.27
LSM8-201ENST00000249299 SUPT5HO00267 1087 aaKnown RBP23■■□□□ 1.27
LSM8-201ENST00000249299 SMARCA2P51531 1590 aa22.93■■□□□ 1.26
LSM8-201ENST00000249299 ATAD2BQ9ULI0 1458 aa22.91■■□□□ 1.26
LSM8-201ENST00000249299 NCAPD3P42695 1498 aa22.86■■□□□ 1.25
LSM8-201ENST00000249299 WIZO95785 1651 aa22.84■■□□□ 1.25
LSM8-201ENST00000249299 CC2D2AQ9P2K1 1620 aa22.76■■□□□ 1.23
LSM8-201ENST00000249299 TOP2AP11388 1531 aaKnown RBP22.76■■□□□ 1.23
LSM8-201ENST00000249299 HMGXB3Q12766 1538 aa22.76■■□□□ 1.23
LSM8-201ENST00000249299 BAZ1BQ9UIG0 1483 aaKnown RBP22.73■■□□□ 1.23
LSM8-201ENST00000249299 PPP6R1Q9UPN7 881 aa22.58■■□□□ 1.21
LSM8-201ENST00000249299 ADRA2BP18089 450 aa22.52■■□□□ 1.2
LSM8-201ENST00000249299 CCDC88BA6NC98 1476 aa22.47■■□□□ 1.19
LSM8-201ENST00000249299 DNAJC5BQ9UF47 199 aa22.46■■□□□ 1.19
LSM8-201ENST00000249299 CFTRP13569 1480 aa22.21■■□□□ 1.15
LSM8-201ENST00000249299 CADPSQ9ULU8 1353 aa22.2■■□□□ 1.14
LSM8-201ENST00000249299 POTEDQ86YR6 584 aa22.18■■□□□ 1.14
LSM8-201ENST00000249299 LAMC3Q9Y6N6 1575 aa22.08■■□□□ 1.13
LSM8-201ENST00000249299 PDS5BQ9NTI5 1447 aa21.96■■□□□ 1.11
LSM8-201ENST00000249299 PIAS4Q8N2W9 510 aaPredicted RBP21.95■■□□□ 1.1
LSM8-201ENST00000249299 PRDM2Q13029 1718 aa21.93■■□□□ 1.1
LSM8-201ENST00000249299 NESP48681 1621 aa21.92■■□□□ 1.1
LSM8-201ENST00000249299 FANCD2Q9BXW9 1451 aa21.88■■□□□ 1.09
LSM8-201ENST00000249299 WRNQ14191 1432 aaPredicted RBP eCLIP21.83■■□□□ 1.09
LSM8-201ENST00000249299 CEP164Q9UPV0 1460 aa21.8■■□□□ 1.08
LSM8-201ENST00000249299 MSH5O43196 834 aa21.78■■□□□ 1.08
LSM8-201ENST00000249299 TRIM41Q8WV44 630 aa21.78■■□□□ 1.08
LSM8-201ENST00000249299 ABCC8Q09428 1581 aa21.76■■□□□ 1.07
LSM8-201ENST00000249299 TOP2BQ02880 1626 aa21.68■■□□□ 1.06
LSM8-201ENST00000249299 CUX1P39880 1505 aa21.66■■□□□ 1.06
LSM8-201ENST00000249299 ERCC6Q03468 1493 aa21.65■■□□□ 1.06
LSM8-201ENST00000249299 BIVM-ERCC5R4GMW8 1640 aa21.65■■□□□ 1.06
LSM8-201ENST00000249299 SYNJ1O43426 1573 aa21.64■■□□□ 1.05
LSM8-201ENST00000249299 MRC2Q9UBG0 1479 aa21.63■■□□□ 1.05
LSM8-201ENST00000249299 DNMBPQ6XZF7 1577 aa21.63■■□□□ 1.05
LSM8-201ENST00000249299 KIF21AQ7Z4S6 1674 aa21.62■■□□□ 1.05
LSM8-201ENST00000249299 TOPBP1Q92547 1522 aa21.6■■□□□ 1.05
LSM8-201ENST00000249299 URB2Q14146 1524 aaKnown RBP21.59■■□□□ 1.05
LSM8-201ENST00000249299 WDR62O43379 1518 aa21.54■■□□□ 1.04
LSM8-201ENST00000249299 FGD5Q6ZNL6 1462 aa21.49■■□□□ 1.03
LSM8-201ENST00000249299 EEA1Q15075 1411 aa21.47■■□□□ 1.03
LSM8-201ENST00000249299 THOC2Q8NI27 1593 aaKnown RBP21.47■■□□□ 1.03
LSM8-201ENST00000249299 POLA1P09884 1462 aaPredicted RBP21.47■■□□□ 1.03
LSM8-201ENST00000249299 SOGA1O94964 1423 aa21.43■■□□□ 1.02
LSM8-201ENST00000249299 ABCA10Q8WWZ4 1543 aa21.39■■□□□ 1.02
LSM8-201ENST00000249299 KIF27Q86VH2 1401 aa21.36■■□□□ 1.01
LSM8-201ENST00000249299 IFT140Q96RY7 1462 aa21.36■■□□□ 1.01
LSM8-201ENST00000249299 CUX2O14529 1486 aa21.34■■□□□ 1.01
LSM8-201ENST00000249299 RAD54L2Q9Y4B4 1467 aa21.31■■□□□ 1
LSM8-201ENST00000249299 TARBP1Q13395 1621 aaKnown RBP21.29■■□□□ 1
LSM8-201ENST00000249299 WDR97A6NE52 1622 aa21.28■■□□□ 1
LSM8-201ENST00000249299 CSRNP3Q8WYN3 585 aa21.28■■□□□ 1
LSM8-201ENST00000249299 RUSC2Q8N2Y8 1516 aa21.22■□□□□ 0.99
LSM8-201ENST00000249299 IGF1RP08069 1367 aa21.18■□□□□ 0.98
LSM8-201ENST00000249299 FAM9AQ8IZU1 332 aaPredicted RBP21.18■□□□□ 0.98
LSM8-201ENST00000249299 GAPVD1Q14C86 1478 aa21.18■□□□□ 0.98
LSM8-201ENST00000249299 ABCA5Q8WWZ7 1642 aa21.17■□□□□ 0.98
LSM8-201ENST00000249299 TDRD9Q8NDG6 1382 aaKnown RBP21.16■□□□□ 0.98
LSM8-201ENST00000249299 ERICH3Q5RHP9 1530 aa21.15■□□□□ 0.98
LSM8-201ENST00000249299 GRIN2BQ13224 1484 aa21.11■□□□□ 0.97
LSM8-201ENST00000249299 PRXQ9BXM0 1461 aa21.11■□□□□ 0.97
LSM8-201ENST00000249299 ZNF608Q9ULD9 1512 aaPredicted RBP21.09■□□□□ 0.97
LSM8-201ENST00000249299 AQRO60306 1485 aaKnown RBP eCLIP21.09■□□□□ 0.973e-11■■■■■ 54.3
LSM8-201ENST00000249299 CARMIL1Q5VZK9 1371 aa21.07■□□□□ 0.96
LSM8-201ENST00000249299 KIF21BO75037 1637 aa21.06■□□□□ 0.96
LSM8-201ENST00000249299 CUL7Q14999 1698 aa21.04■□□□□ 0.96
LSM8-201ENST00000249299 EIF4G3O43432 1585 aaKnown RBP21.02■□□□□ 0.96
LSM8-201ENST00000249299 GOLGA3Q08378 1498 aa21.02■□□□□ 0.96
LSM8-201ENST00000249299 MAGI1Q96QZ7 1491 aaPredicted RBP21■□□□□ 0.95
LSM8-201ENST00000249299 RAPGEF2Q9Y4G8 1499 aa21■□□□□ 0.95
LSM8-201ENST00000249299 FHAD1B1AJZ9 1412 aa21■□□□□ 0.95
LSM8-201ENST00000249299 PBRM1Q86U86 1689 aa20.96■□□□□ 0.95
LSM8-201ENST00000249299 LOC105371045A0A1W2PR82 267 aa20.95■□□□□ 0.94
LSM8-201ENST00000249299 TNIKQ9UKE5 1360 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms