RNA–Protein interactions for RNA: ENST00000424702.1

LSM8-204, Transcript of LSM8 homolog, U6 small nuclear RNA associated, humanhuman

TSL 1 (best) BASIC

Gene LSM8, Length 4,030 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM8-204ENST00000424702 NISCHQ9Y2I1 1504 aa15.74■□□□□ 0.11
LSM8-204ENST00000424702 CCDC180Q9P1Z9 1646 aa13.84□□□□□ -0.19
LSM8-204ENST00000424702 DCAF8L2P0C7V8 631 aa13.68□□□□□ -0.22
LSM8-204ENST00000424702 ABCC9O60706 1549 aa13.46□□□□□ -0.26
LSM8-204ENST00000424702 ZCCHC6Q5VYS8 1495 aaKnown RBP13.13□□□□□ -0.31
LSM8-204ENST00000424702 RB1CC1Q8TDY2 1594 aa13.09□□□□□ -0.31
LSM8-204ENST00000424702 NACADO15069 1562 aa13.08□□□□□ -0.32
LSM8-204ENST00000424702 DCAF1Q9Y4B6 1507 aa13.02□□□□□ -0.33
LSM8-204ENST00000424702 MYO15BQ96JP2 1530 aa12.97□□□□□ -0.33
LSM8-204ENST00000424702 SHROOM4Q9ULL8 1493 aa12.94□□□□□ -0.34
LSM8-204ENST00000424702 SCRIBQ14160 1630 aa12.74□□□□□ -0.37
LSM8-204ENST00000424702 PABPN1Q86U42 306 aaKnown RBP eCLIP12.69□□□□□ -0.38
LSM8-204ENST00000424702 SUPT5HO00267 1087 aaKnown RBP12.61□□□□□ -0.39
LSM8-204ENST00000424702 BAZ1AQ9NRL2 1556 aaPredicted RBP12.32□□□□□ -0.44
LSM8-204ENST00000424702 BICRAQ9NZM4 1560 aa12.24□□□□□ -0.45
LSM8-204ENST00000424702 UNC13AQ9UPW8 1703 aa12.22□□□□□ -0.45
LSM8-204ENST00000424702 SMARCA2P51531 1590 aa12.21□□□□□ -0.45
LSM8-204ENST00000424702 BAZ1BQ9UIG0 1483 aaKnown RBP12.17□□□□□ -0.46
LSM8-204ENST00000424702 CECR2Q9BXF3 1484 aa12.14□□□□□ -0.47
LSM8-204ENST00000424702 EIF4G1Q04637 1599 aaKnown RBP12.14□□□□□ -0.47
LSM8-204ENST00000424702 SMARCA4P51532 1647 aa12.13□□□□□ -0.47
LSM8-204ENST00000424702 RSF1Q96T23 1441 aaPredicted RBP12.12□□□□□ -0.47
LSM8-204ENST00000424702 MROH2BQ7Z745 1585 aa12.06□□□□□ -0.48
LSM8-204ENST00000424702 ATAD2BQ9ULI0 1458 aa12.05□□□□□ -0.48
LSM8-204ENST00000424702 NCAPD3P42695 1498 aa12.01□□□□□ -0.49
LSM8-204ENST00000424702 CC2D2AQ9P2K1 1620 aa12□□□□□ -0.49
LSM8-204ENST00000424702 TOP2AP11388 1531 aaKnown RBP11.97□□□□□ -0.49
LSM8-204ENST00000424702 HMGXB3Q12766 1538 aa11.97□□□□□ -0.49
LSM8-204ENST00000424702 WIZO95785 1651 aa11.9□□□□□ -0.5
LSM8-204ENST00000424702 PEG3Q9GZU2 1588 aa11.88□□□□□ -0.51
LSM8-204ENST00000424702 CHIC1Q5VXU3 224 aa11.86□□□□□ -0.51
LSM8-204ENST00000424702 TRIM41Q8WV44 630 aa11.85□□□□□ -0.51
LSM8-204ENST00000424702 ERCC6Q03468 1493 aa11.85□□□□□ -0.51
LSM8-204ENST00000424702 PDS5BQ9NTI5 1447 aa11.85□□□□□ -0.51
LSM8-204ENST00000424702 CADPSQ9ULU8 1353 aa11.81□□□□□ -0.52
LSM8-204ENST00000424702 CCDC88BA6NC98 1476 aa11.79□□□□□ -0.52
LSM8-204ENST00000424702 DNAJC5BQ9UF47 199 aa11.75□□□□□ -0.53
LSM8-204ENST00000424702 FAM9AQ8IZU1 332 aaPredicted RBP11.75□□□□□ -0.53
LSM8-204ENST00000424702 CEP164Q9UPV0 1460 aa11.7□□□□□ -0.54
LSM8-204ENST00000424702 LAMC3Q9Y6N6 1575 aa11.69□□□□□ -0.54
LSM8-204ENST00000424702 ABCC8Q09428 1581 aa11.68□□□□□ -0.54
LSM8-204ENST00000424702 FANCD2Q9BXW9 1451 aa11.65□□□□□ -0.54
LSM8-204ENST00000424702 CFTRP13569 1480 aa11.65□□□□□ -0.55
LSM8-204ENST00000424702 WRNQ14191 1432 aaPredicted RBP eCLIP11.64□□□□□ -0.55
LSM8-204ENST00000424702 EHMT2Q96KQ7 1210 aa11.61□□□□□ -0.55
LSM8-204ENST00000424702 MRC2Q9UBG0 1479 aa11.57□□□□□ -0.56
LSM8-204ENST00000424702 NESP48681 1621 aa11.53□□□□□ -0.56
LSM8-204ENST00000424702 EEA1Q15075 1411 aa11.52□□□□□ -0.57
LSM8-204ENST00000424702 UBTFP17480 764 aaKnown RBP11.5□□□□□ -0.57
LSM8-204ENST00000424702 KIF27Q86VH2 1401 aa11.49□□□□□ -0.57
LSM8-204ENST00000424702 LOC105371045A0A1W2PR82 267 aa11.48□□□□□ -0.57
LSM8-204ENST00000424702 SOGA1O94964 1423 aa11.47□□□□□ -0.57
LSM8-204ENST00000424702 FBLN2P98095 1184 aa11.45□□□□□ -0.58
LSM8-204ENST00000424702 DNMBPQ6XZF7 1577 aa11.45□□□□□ -0.58
LSM8-204ENST00000424702 CSRNP3Q8WYN3 585 aa11.43□□□□□ -0.58
LSM8-204ENST00000424702 APLP2Q06481 763 aa11.43□□□□□ -0.58
LSM8-204ENST00000424702 IFT140Q96RY7 1462 aa11.42□□□□□ -0.58
LSM8-204ENST00000424702 CUX2O14529 1486 aa11.42□□□□□ -0.58
LSM8-204ENST00000424702 TOPBP1Q92547 1522 aa11.41□□□□□ -0.58
LSM8-204ENST00000424702 CHMP7Q8WUX9 453 aaPredicted RBP11.41□□□□□ -0.58
LSM8-204ENST00000424702 PRDM2Q13029 1718 aa11.41□□□□□ -0.58
LSM8-204ENST00000424702 FGD5Q6ZNL6 1462 aa11.4□□□□□ -0.59
LSM8-204ENST00000424702 TOP2BQ02880 1626 aa11.34□□□□□ -0.59
LSM8-204ENST00000424702 CUX1P39880 1505 aa11.32□□□□□ -0.6
LSM8-204ENST00000424702 TDRD9Q8NDG6 1382 aaKnown RBP11.32□□□□□ -0.6
LSM8-204ENST00000424702 URB2Q14146 1524 aaKnown RBP11.31□□□□□ -0.6
LSM8-204ENST00000424702 POLA1P09884 1462 aaPredicted RBP11.31□□□□□ -0.6
LSM8-204ENST00000424702 WDR62O43379 1518 aa11.31□□□□□ -0.6
LSM8-204ENST00000424702 KIF21AQ7Z4S6 1674 aa11.31□□□□□ -0.6
LSM8-204ENST00000424702 RANGAP1P46060 587 aaPredicted RBP11.3□□□□□ -0.6
LSM8-204ENST00000424702 GAPVD1Q14C86 1478 aa11.3□□□□□ -0.6
LSM8-204ENST00000424702 GRIN2BQ13224 1484 aa11.29□□□□□ -0.6
LSM8-204ENST00000424702 CARMIL1Q5VZK9 1371 aa11.28□□□□□ -0.6
LSM8-204ENST00000424702 SYNJ1O43426 1573 aa11.27□□□□□ -0.61
LSM8-204ENST00000424702 GOLGA3Q08378 1498 aa11.27□□□□□ -0.61
LSM8-204ENST00000424702 BIVM-ERCC5R4GMW8 1640 aa11.27□□□□□ -0.61
LSM8-204ENST00000424702 RAD54L2Q9Y4B4 1467 aa11.26□□□□□ -0.61
LSM8-204ENST00000424702 ABCA10Q8WWZ4 1543 aa11.26□□□□□ -0.61
LSM8-204ENST00000424702 ATP1B4Q9UN42 357 aaPredicted RBP11.25□□□□□ -0.61
LSM8-204ENST00000424702 WDR97A6NE52 1622 aa11.23□□□□□ -0.61
LSM8-204ENST00000424702 FHAD1B1AJZ9 1412 aa11.22□□□□□ -0.61
LSM8-204ENST00000424702 RAPGEF2Q9Y4G8 1499 aa11.2□□□□□ -0.62
LSM8-204ENST00000424702 AQRO60306 1485 aaKnown RBP eCLIP11.19□□□□□ -0.623e-11■■■■■ 54.3
LSM8-204ENST00000424702 THOC2Q8NI27 1593 aaKnown RBP11.19□□□□□ -0.62
LSM8-204ENST00000424702 MAGI1Q96QZ7 1491 aaPredicted RBP11.19□□□□□ -0.62
LSM8-204ENST00000424702 TTBK1Q5TCY1 1321 aaPredicted RBP11.19□□□□□ -0.62
LSM8-204ENST00000424702 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.19□□□□□ -0.62
LSM8-204ENST00000424702 HNRNPUL2Q1KMD3 747 aaKnown RBP11.19□□□□□ -0.62
LSM8-204ENST00000424702 OSCARQ8IYS5 282 aa11.19□□□□□ -0.62
LSM8-204ENST00000424702 NPM1P06748 294 aaKnown RBP eCLIP11.18□□□□□ -0.62
LSM8-204ENST00000424702 PCGF6Q9BYE7 350 aa11.18□□□□□ -0.62
LSM8-204ENST00000424702 CARMIL2Q6F5E8 1435 aa11.18□□□□□ -0.62
LSM8-204ENST00000424702 ERICH3Q5RHP9 1530 aa11.16□□□□□ -0.62
LSM8-204ENST00000424702 SNAPC4Q5SXM2 1469 aa11.15□□□□□ -0.62
LSM8-204ENST00000424702 IGF1RP08069 1367 aa11.14□□□□□ -0.63
LSM8-204ENST00000424702 CUL7Q14999 1698 aa11.14□□□□□ -0.63
LSM8-204ENST00000424702 CDK11AQ9UQ88 783 aaPredicted RBP11.13□□□□□ -0.63
LSM8-204ENST00000424702 SYNJ2O15056 1496 aa11.13□□□□□ -0.63
LSM8-204ENST00000424702 TNIKQ9UKE5 1360 aa11.12□□□□□ -0.63
LSM8-204ENST00000424702 TRIM26Q12899 539 aaPredicted RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms