Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
CDH6P55285 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CDH6P55285 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
CDH6P55285 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC24.53■■□□□ 1.52
CDH6P55285 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC24.53■■□□□ 1.52
CDH6P55285 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
CDH6P55285 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
CDH6P55285 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
CDH6P55285 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC24.52■■□□□ 1.52
CDH6P55285 AP003733.4-201ENST00000623785 1697 ntBASIC24.52■■□□□ 1.52
CDH6P55285 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
CDH6P55285 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CDH6P55285 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CDH6P55285 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC24.51■■□□□ 1.51
CDH6P55285 DUX4L9-201ENST00000449051 1259 ntBASIC24.51■■□□□ 1.51
CDH6P55285 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC24.51■■□□□ 1.51
CDH6P55285 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
CDH6P55285 AL139125.2-201ENST00000623134 1869 ntBASIC24.51■■□□□ 1.51
CDH6P55285 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC24.51■■□□□ 1.51
CDH6P55285 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC24.5■■□□□ 1.51
CDH6P55285 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
CDH6P55285 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC24.5■■□□□ 1.51
CDH6P55285 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CDH6P55285 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
CDH6P55285 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CDH6P55285 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC24.49■■□□□ 1.51
CDH6P55285 NTF6A-201ENST00000591175 560 ntBASIC24.49■■□□□ 1.51
CDH6P55285 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC24.49■■□□□ 1.51
CDH6P55285 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
CDH6P55285 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
CDH6P55285 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
CDH6P55285 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CDH6P55285 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC24.48■■□□□ 1.51
CDH6P55285 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC24.48■■□□□ 1.51
CDH6P55285 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CDH6P55285 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
CDH6P55285 MIR6765-201ENST00000614092 87 ntBASIC24.48■■□□□ 1.51
CDH6P55285 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CDH6P55285 FOXO3B-201ENST00000395675 1928 ntBASIC24.47■■□□□ 1.51
CDH6P55285 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CDH6P55285 KRT18P60-201ENST00000312876 1297 ntBASIC24.47■■□□□ 1.51
CDH6P55285 RPS2P7-201ENST00000447334 885 ntBASIC24.47■■□□□ 1.51
CDH6P55285 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CDH6P55285 AC129492.7-201ENST00000622992 756 ntBASIC24.47■■□□□ 1.51
CDH6P55285 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC24.47■■□□□ 1.51
CDH6P55285 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CDH6P55285 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CDH6P55285 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC24.46■■□□□ 1.51
CDH6P55285 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
CDH6P55285 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC24.46■■□□□ 1.51
CDH6P55285 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC24.46■■□□□ 1.51
CDH6P55285 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CDH6P55285 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
CDH6P55285 AC093323.1-202ENST00000635031 2045 ntBASIC24.45■■□□□ 1.51
CDH6P55285 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
CDH6P55285 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC24.45■■□□□ 1.51
CDH6P55285 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CDH6P55285 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CDH6P55285 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CDH6P55285 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CDH6P55285 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC24.45■■□□□ 1.5
CDH6P55285 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CDH6P55285 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CDH6P55285 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC24.44■■□□□ 1.5
CDH6P55285 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC24.44■■□□□ 1.5
CDH6P55285 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDH6P55285 IDNK-203ENST00000405990 629 ntTSL 2 BASIC24.44■■□□□ 1.5
CDH6P55285 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDH6P55285 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
CDH6P55285 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
CDH6P55285 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDH6P55285 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDH6P55285 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDH6P55285 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC24.43■■□□□ 1.5
CDH6P55285 PREB-202ENST00000406567 1910 ntTSL 5 BASIC24.43■■□□□ 1.5
CDH6P55285 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CDH6P55285 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
CDH6P55285 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CDH6P55285 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CDH6P55285 MIR6089-201ENST00000616698 64 ntBASIC24.42■■□□□ 1.5
CDH6P55285 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC24.42■■□□□ 1.5
CDH6P55285 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CDH6P55285 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CDH6P55285 AC087393.1-201ENST00000582896 145 ntBASIC24.41■■□□□ 1.5
CDH6P55285 PKM-204ENST00000449901 2526 ntTSL 2 BASIC24.41■■□□□ 1.5
CDH6P55285 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CDH6P55285 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC24.41■■□□□ 1.5
CDH6P55285 EED-207ENST00000528180 1745 ntTSL 5 BASIC24.41■■□□□ 1.5
CDH6P55285 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CDH6P55285 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC24.4■■□□□ 1.5
CDH6P55285 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC24.4■■□□□ 1.5
CDH6P55285 LSR-205ENST00000427250 1606 ntTSL 2 BASIC24.4■■□□□ 1.5
CDH6P55285 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC24.4■■□□□ 1.5
CDH6P55285 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CDH6P55285 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CDH6P55285 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CDH6P55285 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CDH6P55285 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC24.39■■□□□ 1.49
CDH6P55285 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC24.39■■□□□ 1.49
CDH6P55285 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms