Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.789e-8■■■■□ 26.4
SMNDC1O75940 ZNF692-220ENST00000496411 1064 ntTSL 318.9■□□□□ 0.629e-8■■■■□ 26.4
SMNDC1O75940 ZNF692-212ENST00000478107 1051 ntTSL 518.42■□□□□ 0.549e-8■■■■□ 26.4
SMNDC1O75940 ZNF692-224ENST00000530986 595 ntTSL 418.35■□□□□ 0.539e-8■■■■□ 26.4
SMNDC1O75940 ZNF692-219ENST00000496231 656 ntTSL 318.26■□□□□ 0.519e-8■■■■□ 26.4
SMNDC1O75940 ZNF692-227ENST00000533927 2026 ntTSL 1 (best)17.52■□□□□ 0.399e-8■■■■□ 26.4
SMNDC1O75940 ZNF692-221ENST00000497847 1031 ntTSL 216.47■□□□□ 0.239e-8■■■■□ 26.4
SMNDC1O75940 ZNF692-206ENST00000463519 2704 ntTSL 1 (best)16.45■□□□□ 0.229e-8■■■■□ 26.4
SMNDC1O75940 ZNF692-214ENST00000483223 901 ntTSL 315.94■□□□□ 0.149e-8■■■■□ 26.4
SMNDC1O75940 ZNF692-222ENST00000528141 576 ntTSL 415.36■□□□□ 0.059e-8■■■■□ 26.4
SMNDC1O75940 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC28.23■■■□□ 2.115e-6■■■■□ 26.3
SMNDC1O75940 AC008105.3-205ENST00000590495 652 ntTSL 322.73■■□□□ 1.235e-6■■■■□ 26.3
SMNDC1O75940 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.49■□□□□ 0.715e-6■■■■□ 26.3
SMNDC1O75940 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.379e-7■■■■□ 26.3
SMNDC1O75940 MKNK2-205ENST00000586828 1503 ntTSL 217.53■□□□□ 0.49e-7■■■■□ 26.3
SMNDC1O75940 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.339e-7■■■■□ 26.3
SMNDC1O75940 MKNK2-213ENST00000591601 3582 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.49e-7■■■■□ 26.3
SMNDC1O75940 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.181e-28■■■■□ 26.2
SMNDC1O75940 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.4■□□□□ 0.061e-28■■■■□ 26.2
SMNDC1O75940 HSP90B1-203ENST00000548462 3032 ntTSL 212.36□□□□□ -0.431e-28■■■■□ 26.2
SMNDC1O75940 PRRC2B-208ENST00000465931 5366 ntTSL 212.17□□□□□ -0.463e-21■■■■□ 26.2
SMNDC1O75940 PRRC2B-201ENST00000320547 4950 ntTSL 211.88□□□□□ -0.513e-21■■■■□ 26.2
SMNDC1O75940 SNORD1B-201ENST00000363091 84 ntBASIC0.48□□□□□ -2.331e-68■■■■□ 26.2
SMNDC1O75940 NCL-202ENST00000356936 890 ntTSL 315.43■□□□□ 0.062e-89■■■■□ 26.1
SMNDC1O75940 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC30.39■■■□□ 2.467e-7■■■■□ 26.1
SMNDC1O75940 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.946e-7■■■■□ 26.1
SMNDC1O75940 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.02■□□□□ 0.86e-7■■■■□ 26.1
SMNDC1O75940 WDR4-206ENST00000479429 759 ntTSL 519.82■□□□□ 0.766e-7■■■■□ 26.1
SMNDC1O75940 BUD23-217ENST00000487006 631 ntTSL 319.22■□□□□ 0.676e-7■■■■□ 26.1
SMNDC1O75940 BUD23-202ENST00000421304 538 ntTSL 417.54■□□□□ 0.46e-7■■■■□ 26.1
SMNDC1O75940 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.347e-7■■■■□ 26.1
SMNDC1O75940 BUD23-210ENST00000441822 632 ntTSL 317.07■□□□□ 0.326e-7■■■■□ 26.1
SMNDC1O75940 BUD23-206ENST00000430270 1260 ntTSL 516.88■□□□□ 0.296e-7■■■■□ 26.1
SMNDC1O75940 BUD23-203ENST00000421744 895 ntTSL 216.86■□□□□ 0.296e-7■■■■□ 26.1
SMNDC1O75940 BUD23-208ENST00000432522 1074 ntTSL 216.85■□□□□ 0.296e-7■■■■□ 26.1
SMNDC1O75940 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.276e-7■■■■□ 26.1
SMNDC1O75940 BUD23-216ENST00000478670 572 ntTSL 416.75■□□□□ 0.276e-7■■■■□ 26.1
SMNDC1O75940 BUD23-218ENST00000496153 505 ntTSL 416.75■□□□□ 0.276e-7■■■■□ 26.1
SMNDC1O75940 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.266e-7■■■■□ 26.1
SMNDC1O75940 BUD23-213ENST00000463307 1815 ntTSL 1 (best)15.34■□□□□ 0.056e-7■■■■□ 26.1
SMNDC1O75940 BUD23-209ENST00000436944 2496 ntTSL 215.29■□□□□ 0.046e-7■■■■□ 26.1
SMNDC1O75940 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.15■□□□□ 0.026e-7■■■■□ 26.1
SMNDC1O75940 JPT1-201ENST00000304834 1633 ntTSL 1 (best)15.05■□□□□ -06e-7■■■■□ 26.1
SMNDC1O75940 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -06e-7■■■■□ 26.1
SMNDC1O75940 WDR4-203ENST00000463902 609 ntTSL 312.27□□□□□ -0.456e-7■■■■□ 26.1
SMNDC1O75940 BUD23-205ENST00000428163 577 ntTSL 312.25□□□□□ -0.456e-7■■■■□ 26.1
SMNDC1O75940 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC12.08□□□□□ -0.486e-7■■■■□ 26.1
SMNDC1O75940 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC12.06□□□□□ -0.486e-7■■■■□ 26.1
SMNDC1O75940 BUD23-207ENST00000430446 738 ntTSL 311.6□□□□□ -0.556e-7■■■■□ 26.1
SMNDC1O75940 YWHAZ-214ENST00000517727 876 ntTSL 310.89□□□□□ -0.676e-7■■■■□ 26.1
SMNDC1O75940 HBG2-203ENST00000380259 1772 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.716e-7■■■■□ 26.1
SMNDC1O75940 HBG2-202ENST00000380252 694 ntTSL 3 BASIC9.45□□□□□ -0.96e-7■■■■□ 26.1
SMNDC1O75940 HBG2-201ENST00000336906 602 ntAPPRIS P1 TSL 1 (best) BASIC9.11□□□□□ -0.956e-7■■■■□ 26.1
SMNDC1O75940 HBG2-204ENST00000444587 307 ntTSL 2 BASIC6.36□□□□□ -1.396e-7■■■■□ 26.1
SMNDC1O75940 RNU6-738P-201ENST00000384531 106 ntBASIC6.3□□□□□ -1.46e-7■■■■□ 26.1
SMNDC1O75940 NOP56-205ENST00000462630 859 ntTSL 28.32□□□□□ -1.084e-22■■■■□ 26.1
SMNDC1O75940 AC092384.3-202ENST00000564646 2873 ntBASIC16.99■□□□□ 0.311e-6■■■■□ 26
SMNDC1O75940 TNPO2-204ENST00000585886 2362 ntTSL 1 (best)15.82■□□□□ 0.127e-16■■■■□ 26
SMNDC1O75940 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -07e-16■■■■□ 26
SMNDC1O75940 TNPO2-210ENST00000588216 3056 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.337e-16■■■■□ 26
SMNDC1O75940 TSC2-221ENST00000568366 767 ntTSL 415.58■□□□□ 0.086e-7■■■■□ 26
SMNDC1O75940 TSC2-213ENST00000483020 563 ntTSL 411.78□□□□□ -0.526e-7■■■■□ 26
SMNDC1O75940 TSC2-212ENST00000471143 577 ntTSL 410.78□□□□□ -0.686e-7■■■■□ 26
SMNDC1O75940 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.43e-6■■■■□ 25.9
SMNDC1O75940 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.063e-6■■■■□ 25.9
SMNDC1O75940 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.32■□□□□ 0.043e-6■■■■□ 25.9
SMNDC1O75940 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.143e-6■■■■□ 25.9
SMNDC1O75940 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.16■□□□□ 0.828e-10■■■■□ 25.9
SMNDC1O75940 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.271e-13■■■■□ 25.9
SMNDC1O75940 PFKP-208ENST00000433193 453 ntTSL 310.53□□□□□ -0.728e-10■■■■□ 25.9
SMNDC1O75940 EIF4A1-217ENST00000581384 642 ntTSL 58.99□□□□□ -0.972e-7■■■■□ 25.9
SMNDC1O75940 FASTK-213ENST00000482806 1826 ntTSL 520.51■□□□□ 0.874e-7■■■■□ 25.9
SMNDC1O75940 FASTK-215ENST00000489884 1751 ntTSL 1 (best)19.62■□□□□ 0.734e-7■■■■□ 25.9
SMNDC1O75940 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.52■□□□□ 0.724e-7■■■■□ 25.9
SMNDC1O75940 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.694e-7■■■■□ 25.9
SMNDC1O75940 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.6■□□□□ 0.574e-7■■■■□ 25.9
SMNDC1O75940 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC15.93■□□□□ 0.144e-7■■■■□ 25.9
SMNDC1O75940 FASTK-204ENST00000460980 1521 ntTSL 514.31□□□□□ -0.124e-7■■■■□ 25.9
SMNDC1O75940 SNORD70.1-201ENST00000391007 85 ntBASIC5.41□□□□□ -1.542e-27■■■■□ 25.8
SMNDC1O75940 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.261e-6■■■■□ 25.8
SMNDC1O75940 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.446e-7■■■■□ 25.7
SMNDC1O75940 PHRF1-206ENST00000534320 5178 ntTSL 517.22■□□□□ 0.356e-7■■■■□ 25.7
SMNDC1O75940 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.346e-7■■■■□ 25.7
SMNDC1O75940 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.286e-7■■■■□ 25.7
SMNDC1O75940 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.126e-7■■■■□ 25.7
SMNDC1O75940 THAP9-AS1-202ENST00000504520 2770 ntTSL 1 (best) BASIC12.21□□□□□ -0.452e-37■■■■□ 25.7
SMNDC1O75940 THAP9-AS1-208ENST00000508772 566 ntTSL 48.79□□□□□ -12e-37■■■■□ 25.7
SMNDC1O75940 SEC31A-218ENST00000506495 541 ntTSL 48.79□□□□□ -12e-37■■■■□ 25.7
SMNDC1O75940 THAP9-AS1-204ENST00000504792 2577 ntTSL 2 BASIC8.7□□□□□ -1.022e-37■■■■□ 25.7
SMNDC1O75940 SEC31A-220ENST00000507051 458 ntTSL 48.4□□□□□ -1.062e-37■■■■□ 25.7
SMNDC1O75940 THAP9-AS1-211ENST00000512932 971 ntTSL 28.35□□□□□ -1.072e-37■■■■□ 25.7
SMNDC1O75940 THAP9-AS1-210ENST00000511271 516 ntTSL 27.7□□□□□ -1.182e-37■■■■□ 25.7
SMNDC1O75940 SEC31A-222ENST00000507676 551 ntTSL 46.6□□□□□ -1.352e-37■■■■□ 25.7
SMNDC1O75940 SEC31A-211ENST00000503210 553 ntTSL 46.38□□□□□ -1.392e-37■■■■□ 25.7
SMNDC1O75940 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.76□□□□□ -1.492e-37■■■■□ 25.7
SMNDC1O75940 DDX39B-206ENST00000419338 928 ntTSL 512.71□□□□□ -0.379e-9■■■■□ 25.7
SMNDC1O75940 DDX39B-219ENST00000481456 5158 ntTSL 212□□□□□ -0.499e-9■■■■□ 25.7
SMNDC1O75940 DDX39B-212ENST00000456662 932 ntTSL 510.81□□□□□ -0.689e-9■■■■□ 25.7
SMNDC1O75940 DDX39B-208ENST00000428098 817 ntTSL 310.81□□□□□ -0.689e-9■■■■□ 25.7
SMNDC1O75940 DDX39B-210ENST00000431908 914 ntTSL 510.77□□□□□ -0.699e-9■■■■□ 25.7
Retrieved 100 of 11,362 protein–RNA pairs in 158.6 ms