Protein–RNA interactions for Protein: Q9H3E2

SNX25, Sorting nexin-25, humanhuman

Predictions only

Length 840 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX25Q9H3E2 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
SNX25Q9H3E2 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC25.4■■□□□ 1.66
SNX25Q9H3E2 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC25.39■■□□□ 1.66
SNX25Q9H3E2 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
SNX25Q9H3E2 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC25.39■■□□□ 1.66
SNX25Q9H3E2 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
SNX25Q9H3E2 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
SNX25Q9H3E2 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
SNX25Q9H3E2 AC097639.1-201ENST00000565519 1891 ntBASIC25.38■■□□□ 1.65
SNX25Q9H3E2 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
SNX25Q9H3E2 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SNX25Q9H3E2 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
SNX25Q9H3E2 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
SNX25Q9H3E2 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC25.37■■□□□ 1.65
SNX25Q9H3E2 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
SNX25Q9H3E2 AC103834.1-201ENST00000520383 144 ntBASIC25.37■■□□□ 1.65
SNX25Q9H3E2 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC25.37■■□□□ 1.65
SNX25Q9H3E2 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SNX25Q9H3E2 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SNX25Q9H3E2 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SNX25Q9H3E2 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
SNX25Q9H3E2 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
SNX25Q9H3E2 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
SNX25Q9H3E2 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
SNX25Q9H3E2 MIR4508-201ENST00000584178 70 ntBASIC25.36■■□□□ 1.65
SNX25Q9H3E2 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC25.36■■□□□ 1.65
SNX25Q9H3E2 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC25.36■■□□□ 1.65
SNX25Q9H3E2 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC25.35■■□□□ 1.65
SNX25Q9H3E2 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC25.35■■□□□ 1.65
SNX25Q9H3E2 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SNX25Q9H3E2 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
SNX25Q9H3E2 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC25.34■■□□□ 1.65
SNX25Q9H3E2 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC25.34■■□□□ 1.65
SNX25Q9H3E2 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SNX25Q9H3E2 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SNX25Q9H3E2 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
SNX25Q9H3E2 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
SNX25Q9H3E2 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SNX25Q9H3E2 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC25.33■■□□□ 1.65
SNX25Q9H3E2 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
SNX25Q9H3E2 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC25.33■■□□□ 1.65
SNX25Q9H3E2 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC25.32■■□□□ 1.64
SNX25Q9H3E2 CREM-210ENST00000374721 2020 ntTSL 5 BASIC25.32■■□□□ 1.64
SNX25Q9H3E2 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.32■■□□□ 1.64
SNX25Q9H3E2 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC25.32■■□□□ 1.64
SNX25Q9H3E2 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SNX25Q9H3E2 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SNX25Q9H3E2 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
SNX25Q9H3E2 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
SNX25Q9H3E2 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC25.32■■□□□ 1.64
SNX25Q9H3E2 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC25.31■■□□□ 1.64
SNX25Q9H3E2 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
SNX25Q9H3E2 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SNX25Q9H3E2 AC022616.5-201ENST00000518796 181 ntBASIC25.31■■□□□ 1.64
SNX25Q9H3E2 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SNX25Q9H3E2 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
SNX25Q9H3E2 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC25.31■■□□□ 1.64
SNX25Q9H3E2 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SNX25Q9H3E2 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SNX25Q9H3E2 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SNX25Q9H3E2 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC25.3■■□□□ 1.64
SNX25Q9H3E2 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SNX25Q9H3E2 AL592295.1-201ENST00000400984 884 ntBASIC25.29■■□□□ 1.64
SNX25Q9H3E2 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SNX25Q9H3E2 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
SNX25Q9H3E2 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SNX25Q9H3E2 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SNX25Q9H3E2 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
SNX25Q9H3E2 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC25.28■■□□□ 1.64
SNX25Q9H3E2 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC25.28■■□□□ 1.64
SNX25Q9H3E2 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SNX25Q9H3E2 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC25.27■■□□□ 1.64
SNX25Q9H3E2 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SNX25Q9H3E2 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC25.27■■□□□ 1.64
SNX25Q9H3E2 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
SNX25Q9H3E2 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC25.26■■□□□ 1.63
SNX25Q9H3E2 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SNX25Q9H3E2 AC103724.3-201ENST00000564481 992 ntBASIC25.26■■□□□ 1.63
SNX25Q9H3E2 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SNX25Q9H3E2 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SNX25Q9H3E2 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC25.26■■□□□ 1.63
SNX25Q9H3E2 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SNX25Q9H3E2 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
SNX25Q9H3E2 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
SNX25Q9H3E2 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC25.25■■□□□ 1.63
SNX25Q9H3E2 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC25.25■■□□□ 1.63
SNX25Q9H3E2 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC25.25■■□□□ 1.63
SNX25Q9H3E2 FOXO3B-201ENST00000395675 1928 ntBASIC25.25■■□□□ 1.63
SNX25Q9H3E2 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC25.24■■□□□ 1.63
SNX25Q9H3E2 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC25.24■■□□□ 1.63
SNX25Q9H3E2 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SNX25Q9H3E2 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SNX25Q9H3E2 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
SNX25Q9H3E2 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SNX25Q9H3E2 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SNX25Q9H3E2 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
SNX25Q9H3E2 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SNX25Q9H3E2 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SNX25Q9H3E2 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC25.23■■□□□ 1.63
SNX25Q9H3E2 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC25.23■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms