Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TIMP4Q99727 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.79■■□□□ 1.08
TIMP4Q99727 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
TIMP4Q99727 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TIMP4Q99727 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
TIMP4Q99727 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TIMP4Q99727 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.78■■□□□ 1.08
TIMP4Q99727 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TIMP4Q99727 ERN1-208ENST00000606895 2068 ntBASIC21.78■■□□□ 1.08
TIMP4Q99727 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TIMP4Q99727 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TIMP4Q99727 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TIMP4Q99727 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TIMP4Q99727 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
TIMP4Q99727 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.77■■□□□ 1.08
TIMP4Q99727 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.77■■□□□ 1.08
TIMP4Q99727 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TIMP4Q99727 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
TIMP4Q99727 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
TIMP4Q99727 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
TIMP4Q99727 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.76■■□□□ 1.07
TIMP4Q99727 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TIMP4Q99727 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.76■■□□□ 1.07
TIMP4Q99727 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TIMP4Q99727 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC21.76■■□□□ 1.07
TIMP4Q99727 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.76■■□□□ 1.07
TIMP4Q99727 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TIMP4Q99727 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TIMP4Q99727 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.75■■□□□ 1.07
TIMP4Q99727 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC21.75■■□□□ 1.07
TIMP4Q99727 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TIMP4Q99727 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TIMP4Q99727 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TIMP4Q99727 PVT1_1.1-201ENST00000615125 194 ntBASIC21.74■■□□□ 1.07
TIMP4Q99727 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.74■■□□□ 1.07
TIMP4Q99727 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.74■■□□□ 1.07
TIMP4Q99727 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TIMP4Q99727 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.73■■□□□ 1.07
TIMP4Q99727 AC087393.1-201ENST00000582896 145 ntBASIC21.73■■□□□ 1.07
TIMP4Q99727 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.73■■□□□ 1.07
TIMP4Q99727 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.73■■□□□ 1.07
TIMP4Q99727 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.73■■□□□ 1.07
TIMP4Q99727 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
TIMP4Q99727 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
TIMP4Q99727 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.73■■□□□ 1.07
TIMP4Q99727 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
TIMP4Q99727 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TIMP4Q99727 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TIMP4Q99727 AC010501.1-201ENST00000606270 1962 ntBASIC21.72■■□□□ 1.07
TIMP4Q99727 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
TIMP4Q99727 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.72■■□□□ 1.07
TIMP4Q99727 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
TIMP4Q99727 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
TIMP4Q99727 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TIMP4Q99727 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TIMP4Q99727 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
TIMP4Q99727 KRT8P33-201ENST00000508125 1423 ntBASIC21.72■■□□□ 1.07
TIMP4Q99727 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TIMP4Q99727 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TIMP4Q99727 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
TIMP4Q99727 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.71■■□□□ 1.07
TIMP4Q99727 RPS2P7-201ENST00000447334 885 ntBASIC21.71■■□□□ 1.07
TIMP4Q99727 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
TIMP4Q99727 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TIMP4Q99727 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.7■■□□□ 1.06
TIMP4Q99727 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TIMP4Q99727 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.7■■□□□ 1.06
TIMP4Q99727 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.7■■□□□ 1.06
TIMP4Q99727 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TIMP4Q99727 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TIMP4Q99727 KRT18P10-201ENST00000388836 1287 ntBASIC21.69■■□□□ 1.06
TIMP4Q99727 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.69■■□□□ 1.06
TIMP4Q99727 AC103834.1-201ENST00000520383 144 ntBASIC21.69■■□□□ 1.06
TIMP4Q99727 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TIMP4Q99727 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TIMP4Q99727 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TIMP4Q99727 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TIMP4Q99727 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TIMP4Q99727 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.68■■□□□ 1.06
TIMP4Q99727 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TIMP4Q99727 YBX1P4-201ENST00000392794 808 ntBASIC21.68■■□□□ 1.06
TIMP4Q99727 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.68■■□□□ 1.06
TIMP4Q99727 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TIMP4Q99727 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TIMP4Q99727 AC019171.1-201ENST00000601251 1056 ntBASIC21.67■■□□□ 1.06
TIMP4Q99727 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
TIMP4Q99727 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TIMP4Q99727 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TIMP4Q99727 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TIMP4Q99727 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TIMP4Q99727 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TIMP4Q99727 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TIMP4Q99727 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TIMP4Q99727 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TIMP4Q99727 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.65■■□□□ 1.06
TIMP4Q99727 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TIMP4Q99727 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TIMP4Q99727 MIR4508-201ENST00000584178 70 ntBASIC21.65■■□□□ 1.06
TIMP4Q99727 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TIMP4Q99727 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms