Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC65Q8IXS2 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC65Q8IXS2 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC26.34■■□□□ 1.81
CCDC65Q8IXS2 SLC6A10P-202ENST00000431994 2058 ntBASIC26.34■■□□□ 1.81
CCDC65Q8IXS2 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC65Q8IXS2 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC65Q8IXS2 KRT18P60-201ENST00000312876 1297 ntBASIC26.34■■□□□ 1.81
CCDC65Q8IXS2 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
CCDC65Q8IXS2 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.34■■□□□ 1.81
CCDC65Q8IXS2 AC142381.3-201ENST00000568208 1670 ntBASIC26.34■■□□□ 1.81
CCDC65Q8IXS2 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CCDC65Q8IXS2 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC65Q8IXS2 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC26.33■■□□□ 1.81
CCDC65Q8IXS2 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CCDC65Q8IXS2 DUX4L9-201ENST00000449051 1259 ntBASIC26.33■■□□□ 1.81
CCDC65Q8IXS2 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC26.33■■□□□ 1.81
CCDC65Q8IXS2 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC26.33■■□□□ 1.81
CCDC65Q8IXS2 NTF6A-201ENST00000591175 560 ntBASIC26.33■■□□□ 1.81
CCDC65Q8IXS2 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC26.32■■□□□ 1.8
CCDC65Q8IXS2 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC26.32■■□□□ 1.8
CCDC65Q8IXS2 MIR6765-201ENST00000614092 87 ntBASIC26.32■■□□□ 1.8
CCDC65Q8IXS2 AC129492.7-201ENST00000622992 756 ntBASIC26.32■■□□□ 1.8
CCDC65Q8IXS2 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC65Q8IXS2 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
CCDC65Q8IXS2 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
CCDC65Q8IXS2 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC65Q8IXS2 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CCDC65Q8IXS2 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
CCDC65Q8IXS2 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC65Q8IXS2 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC65Q8IXS2 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC65Q8IXS2 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CCDC65Q8IXS2 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC26.31■■□□□ 1.8
CCDC65Q8IXS2 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC65Q8IXS2 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC65Q8IXS2 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
CCDC65Q8IXS2 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CCDC65Q8IXS2 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC65Q8IXS2 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC65Q8IXS2 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC26.29■■□□□ 1.8
CCDC65Q8IXS2 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC65Q8IXS2 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
CCDC65Q8IXS2 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC65Q8IXS2 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC65Q8IXS2 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC65Q8IXS2 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC26.29■■□□□ 1.8
CCDC65Q8IXS2 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC26.29■■□□□ 1.8
CCDC65Q8IXS2 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC65Q8IXS2 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
CCDC65Q8IXS2 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
CCDC65Q8IXS2 MED17-227ENST00000640521 2047 ntTSL 5 BASIC26.28■■□□□ 1.8
CCDC65Q8IXS2 IDNK-203ENST00000405990 629 ntTSL 2 BASIC26.28■■□□□ 1.8
CCDC65Q8IXS2 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
CCDC65Q8IXS2 RPS2P7-201ENST00000447334 885 ntBASIC26.28■■□□□ 1.8
CCDC65Q8IXS2 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC26.28■■□□□ 1.8
CCDC65Q8IXS2 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
CCDC65Q8IXS2 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CCDC65Q8IXS2 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC65Q8IXS2 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC65Q8IXS2 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC65Q8IXS2 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC65Q8IXS2 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
CCDC65Q8IXS2 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC65Q8IXS2 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CCDC65Q8IXS2 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC65Q8IXS2 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC65Q8IXS2 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC65Q8IXS2 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC26.26■■□□□ 1.79
CCDC65Q8IXS2 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC65Q8IXS2 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CCDC65Q8IXS2 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
CCDC65Q8IXS2 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
CCDC65Q8IXS2 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC26.25■■□□□ 1.79
CCDC65Q8IXS2 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CCDC65Q8IXS2 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC65Q8IXS2 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC65Q8IXS2 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC65Q8IXS2 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CCDC65Q8IXS2 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC26.24■■□□□ 1.79
CCDC65Q8IXS2 AC138932.3-201ENST00000567634 1902 ntBASIC26.24■■□□□ 1.79
CCDC65Q8IXS2 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
CCDC65Q8IXS2 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CCDC65Q8IXS2 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CCDC65Q8IXS2 AC087393.1-201ENST00000582896 145 ntBASIC26.23■■□□□ 1.79
CCDC65Q8IXS2 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
CCDC65Q8IXS2 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC26.22■■□□□ 1.79
CCDC65Q8IXS2 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CCDC65Q8IXS2 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC26.22■■□□□ 1.79
CCDC65Q8IXS2 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
CCDC65Q8IXS2 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CCDC65Q8IXS2 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.21■■□□□ 1.79
CCDC65Q8IXS2 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC26.21■■□□□ 1.79
CCDC65Q8IXS2 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC26.21■■□□□ 1.79
CCDC65Q8IXS2 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
CCDC65Q8IXS2 FOXO3B-201ENST00000395675 1928 ntBASIC26.2■■□□□ 1.79
CCDC65Q8IXS2 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
CCDC65Q8IXS2 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CCDC65Q8IXS2 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CCDC65Q8IXS2 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CCDC65Q8IXS2 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC26.2■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms