Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
PDLIM3Q53GG5 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
PDLIM3Q53GG5 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
PDLIM3Q53GG5 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PDLIM3Q53GG5 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PDLIM3Q53GG5 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
PDLIM3Q53GG5 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.42■□□□□ 0.7
PDLIM3Q53GG5 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PDLIM3Q53GG5 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.42■□□□□ 0.7
PDLIM3Q53GG5 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC19.4■□□□□ 0.7
PDLIM3Q53GG5 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.4■□□□□ 0.7
PDLIM3Q53GG5 AC148477.6-201ENST00000623746 465 ntBASIC19.4■□□□□ 0.7
PDLIM3Q53GG5 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PDLIM3Q53GG5 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PDLIM3Q53GG5 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
PDLIM3Q53GG5 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
PDLIM3Q53GG5 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
PDLIM3Q53GG5 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PDLIM3Q53GG5 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PDLIM3Q53GG5 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.39■□□□□ 0.69
PDLIM3Q53GG5 AC096887.2-201ENST00000623443 1957 ntBASIC19.39■□□□□ 0.69
PDLIM3Q53GG5 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
PDLIM3Q53GG5 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.38■□□□□ 0.69
PDLIM3Q53GG5 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PDLIM3Q53GG5 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PDLIM3Q53GG5 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
PDLIM3Q53GG5 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC19.38■□□□□ 0.69
PDLIM3Q53GG5 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC19.38■□□□□ 0.69
PDLIM3Q53GG5 AC022211.4-201ENST00000625094 2161 ntBASIC19.37■□□□□ 0.69
PDLIM3Q53GG5 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC19.37■□□□□ 0.69
PDLIM3Q53GG5 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
PDLIM3Q53GG5 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PDLIM3Q53GG5 AC060814.1-201ENST00000554326 538 ntBASIC19.37■□□□□ 0.69
PDLIM3Q53GG5 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC19.37■□□□□ 0.69
PDLIM3Q53GG5 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PDLIM3Q53GG5 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PDLIM3Q53GG5 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PDLIM3Q53GG5 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC19.36■□□□□ 0.69
PDLIM3Q53GG5 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PDLIM3Q53GG5 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PDLIM3Q53GG5 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC19.36■□□□□ 0.69
PDLIM3Q53GG5 MIR219A2-201ENST00000608502 1504 ntBASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 AC025884.2-201ENST00000553429 711 ntBASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 DUX4L18-201ENST00000553347 1267 ntBASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
PDLIM3Q53GG5 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.33■□□□□ 0.68
PDLIM3Q53GG5 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PDLIM3Q53GG5 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
PDLIM3Q53GG5 AC138932.3-201ENST00000567634 1902 ntBASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms