Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
PDLIM3Q53GG5 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
PDLIM3Q53GG5 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
PDLIM3Q53GG5 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
PDLIM3Q53GG5 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
PDLIM3Q53GG5 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PDLIM3Q53GG5 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PDLIM3Q53GG5 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
PDLIM3Q53GG5 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.42■□□□□ 0.7
PDLIM3Q53GG5 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PDLIM3Q53GG5 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.42■□□□□ 0.7
PDLIM3Q53GG5 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.41■□□□□ 0.7
PDLIM3Q53GG5 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC19.4■□□□□ 0.7
PDLIM3Q53GG5 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.4■□□□□ 0.7
PDLIM3Q53GG5 AC148477.6-201ENST00000623746 465 ntBASIC19.4■□□□□ 0.7
PDLIM3Q53GG5 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PDLIM3Q53GG5 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PDLIM3Q53GG5 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
PDLIM3Q53GG5 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
PDLIM3Q53GG5 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
PDLIM3Q53GG5 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PDLIM3Q53GG5 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PDLIM3Q53GG5 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.39■□□□□ 0.69
PDLIM3Q53GG5 AC096887.2-201ENST00000623443 1957 ntBASIC19.39■□□□□ 0.69
PDLIM3Q53GG5 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
PDLIM3Q53GG5 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.38■□□□□ 0.69
PDLIM3Q53GG5 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PDLIM3Q53GG5 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PDLIM3Q53GG5 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
PDLIM3Q53GG5 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC19.38■□□□□ 0.69
PDLIM3Q53GG5 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC19.38■□□□□ 0.69
PDLIM3Q53GG5 AC022211.4-201ENST00000625094 2161 ntBASIC19.37■□□□□ 0.69
PDLIM3Q53GG5 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC19.37■□□□□ 0.69
PDLIM3Q53GG5 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
PDLIM3Q53GG5 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PDLIM3Q53GG5 AC060814.1-201ENST00000554326 538 ntBASIC19.37■□□□□ 0.69
PDLIM3Q53GG5 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC19.37■□□□□ 0.69
PDLIM3Q53GG5 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PDLIM3Q53GG5 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PDLIM3Q53GG5 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PDLIM3Q53GG5 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC19.36■□□□□ 0.69
PDLIM3Q53GG5 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PDLIM3Q53GG5 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PDLIM3Q53GG5 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC19.36■□□□□ 0.69
PDLIM3Q53GG5 MIR219A2-201ENST00000608502 1504 ntBASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 AC025884.2-201ENST00000553429 711 ntBASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
PDLIM3Q53GG5 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 DUX4L18-201ENST00000553347 1267 ntBASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.34■□□□□ 0.69
PDLIM3Q53GG5 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
PDLIM3Q53GG5 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.33■□□□□ 0.68
PDLIM3Q53GG5 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PDLIM3Q53GG5 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
PDLIM3Q53GG5 AC138932.3-201ENST00000567634 1902 ntBASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms