Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SMCHD1A6NHR9 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC27.64■■■□□ 2.02
SMCHD1A6NHR9 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC27.64■■■□□ 2.01
SMCHD1A6NHR9 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC27.64■■■□□ 2.01
SMCHD1A6NHR9 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC27.63■■■□□ 2.01
SMCHD1A6NHR9 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
SMCHD1A6NHR9 AC019171.1-201ENST00000601251 1056 ntBASIC27.63■■■□□ 2.01
SMCHD1A6NHR9 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC27.63■■■□□ 2.01
SMCHD1A6NHR9 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SMCHD1A6NHR9 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SMCHD1A6NHR9 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC27.62■■■□□ 2.01
SMCHD1A6NHR9 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC27.62■■■□□ 2.01
SMCHD1A6NHR9 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
SMCHD1A6NHR9 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC27.62■■■□□ 2.01
SMCHD1A6NHR9 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
SMCHD1A6NHR9 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
SMCHD1A6NHR9 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
SMCHD1A6NHR9 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC27.61■■■□□ 2.01
SMCHD1A6NHR9 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
SMCHD1A6NHR9 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC27.6■■■□□ 2.01
SMCHD1A6NHR9 TK2-216ENST00000564917 1156 ntTSL 3 BASIC27.6■■■□□ 2.01
SMCHD1A6NHR9 ERN1-208ENST00000606895 2068 ntBASIC27.6■■■□□ 2.01
SMCHD1A6NHR9 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
SMCHD1A6NHR9 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC27.59■■■□□ 2.01
SMCHD1A6NHR9 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC27.59■■■□□ 2.01
SMCHD1A6NHR9 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC27.59■■■□□ 2.01
SMCHD1A6NHR9 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
SMCHD1A6NHR9 AL031848.2-201ENST00000607670 837 ntBASIC27.58■■■□□ 2.01
SMCHD1A6NHR9 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC27.58■■■□□ 2.01
SMCHD1A6NHR9 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC27.58■■■□□ 2.01
SMCHD1A6NHR9 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC27.58■■■□□ 2.01
SMCHD1A6NHR9 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC27.58■■■□□ 2.01
SMCHD1A6NHR9 AL121749.1-202ENST00000609313 2153 ntBASIC27.58■■■□□ 2.01
SMCHD1A6NHR9 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC27.57■■■□□ 2
SMCHD1A6NHR9 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
SMCHD1A6NHR9 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC27.57■■■□□ 2
SMCHD1A6NHR9 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC27.57■■■□□ 2
SMCHD1A6NHR9 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC27.57■■■□□ 2
SMCHD1A6NHR9 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC27.57■■■□□ 2
SMCHD1A6NHR9 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC27.57■■■□□ 2
SMCHD1A6NHR9 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
SMCHD1A6NHR9 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
SMCHD1A6NHR9 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC27.56■■■□□ 2
SMCHD1A6NHR9 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC27.56■■■□□ 2
SMCHD1A6NHR9 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC27.56■■■□□ 2
SMCHD1A6NHR9 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC27.56■■■□□ 2
SMCHD1A6NHR9 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC27.56■■■□□ 2
SMCHD1A6NHR9 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC27.56■■■□□ 2
SMCHD1A6NHR9 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC27.56■■■□□ 2
SMCHD1A6NHR9 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC27.56■■■□□ 2
SMCHD1A6NHR9 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC27.55■■■□□ 2
SMCHD1A6NHR9 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC27.55■■■□□ 2
SMCHD1A6NHR9 AC239859.2-201ENST00000444165 318 ntBASIC27.55■■■□□ 2
SMCHD1A6NHR9 Z92544.1-202ENST00000571933 1220 ntBASIC27.55■■■□□ 2
SMCHD1A6NHR9 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
SMCHD1A6NHR9 RNF146-205ENST00000477776 762 ntTSL 3 BASIC27.55■■■□□ 2
SMCHD1A6NHR9 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
SMCHD1A6NHR9 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC27.54■■■□□ 2
SMCHD1A6NHR9 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC27.54■■■□□ 2
SMCHD1A6NHR9 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC27.54■■■□□ 2
SMCHD1A6NHR9 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC27.54■■■□□ 2
SMCHD1A6NHR9 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC27.54■■■□□ 2
SMCHD1A6NHR9 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC27.53■■■□□ 2
SMCHD1A6NHR9 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC27.53■■■□□ 2
SMCHD1A6NHR9 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC27.53■■■□□ 2
SMCHD1A6NHR9 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
SMCHD1A6NHR9 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC27.52■■■□□ 2
SMCHD1A6NHR9 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC27.52■■■□□ 2
SMCHD1A6NHR9 AL356441.2-201ENST00000443009 864 ntBASIC27.52■■■□□ 2
SMCHD1A6NHR9 AC096887.2-201ENST00000623443 1957 ntBASIC27.52■■■□□ 2
SMCHD1A6NHR9 AC022616.5-201ENST00000518796 181 ntBASIC27.51■■■□□ 2
SMCHD1A6NHR9 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC27.51■■■□□ 2
SMCHD1A6NHR9 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC27.51■■■□□ 2
SMCHD1A6NHR9 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC27.51■■■□□ 2
SMCHD1A6NHR9 KRT18P10-201ENST00000388836 1287 ntBASIC27.51■■□□□ 1.99
SMCHD1A6NHR9 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC27.51■■□□□ 1.99
SMCHD1A6NHR9 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC27.51■■□□□ 1.99
SMCHD1A6NHR9 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
SMCHD1A6NHR9 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC27.5■■□□□ 1.99
SMCHD1A6NHR9 LONRF2P2-201ENST00000439212 571 ntBASIC27.5■■□□□ 1.99
SMCHD1A6NHR9 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SMCHD1A6NHR9 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SMCHD1A6NHR9 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SMCHD1A6NHR9 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC27.5■■□□□ 1.99
SMCHD1A6NHR9 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SMCHD1A6NHR9 SNAI3-AS1-204ENST00000567997 2048 ntBASIC27.49■■□□□ 1.99
SMCHD1A6NHR9 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC27.49■■□□□ 1.99
SMCHD1A6NHR9 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
SMCHD1A6NHR9 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC27.49■■□□□ 1.99
SMCHD1A6NHR9 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC27.49■■□□□ 1.99
SMCHD1A6NHR9 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC27.48■■□□□ 1.99
SMCHD1A6NHR9 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC27.48■■□□□ 1.99
SMCHD1A6NHR9 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC27.48■■□□□ 1.99
SMCHD1A6NHR9 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
SMCHD1A6NHR9 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC27.48■■□□□ 1.99
SMCHD1A6NHR9 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC27.48■■□□□ 1.99
SMCHD1A6NHR9 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
SMCHD1A6NHR9 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC27.48■■□□□ 1.99
SMCHD1A6NHR9 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC27.48■■□□□ 1.99
SMCHD1A6NHR9 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC27.47■■□□□ 1.99
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms