Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
USH2AO75445 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
USH2AO75445 PBX2P1-201ENST00000493219 1291 ntBASIC11.03□□□□□ -0.64
USH2AO75445 MIR6724-1-201ENST00000616420 92 ntBASIC11.03□□□□□ -0.64
USH2AO75445 MIR6724-2-201ENST00000616483 92 ntBASIC11.03□□□□□ -0.64
USH2AO75445 MIR6724-4-201ENST00000617390 92 ntBASIC11.03□□□□□ -0.64
USH2AO75445 MIR6724-3-201ENST00000622482 92 ntBASIC11.03□□□□□ -0.64
USH2AO75445 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
USH2AO75445 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC11.03□□□□□ -0.64
USH2AO75445 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
USH2AO75445 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC11.03□□□□□ -0.64
USH2AO75445 LSM4-201ENST00000252816 986 ntTSL 2 BASIC11.03□□□□□ -0.64
USH2AO75445 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC11.02□□□□□ -0.64
USH2AO75445 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC11.02□□□□□ -0.64
USH2AO75445 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
USH2AO75445 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
USH2AO75445 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC11.02□□□□□ -0.64
USH2AO75445 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC11.02□□□□□ -0.64
USH2AO75445 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC11.02□□□□□ -0.65
USH2AO75445 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
USH2AO75445 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
USH2AO75445 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
USH2AO75445 AC022517.1-201ENST00000592429 346 ntBASIC11.02□□□□□ -0.65
USH2AO75445 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
USH2AO75445 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC11.02□□□□□ -0.65
USH2AO75445 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
USH2AO75445 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC11.01□□□□□ -0.65
USH2AO75445 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
USH2AO75445 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
USH2AO75445 IKBKGP1-201ENST00000612193 1073 ntBASIC11.01□□□□□ -0.65
USH2AO75445 KRT18P24-201ENST00000344739 1156 ntBASIC11.01□□□□□ -0.65
USH2AO75445 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
USH2AO75445 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
USH2AO75445 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC11□□□□□ -0.65
USH2AO75445 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
USH2AO75445 AL136967.2-201ENST00000623968 743 ntBASIC11□□□□□ -0.65
USH2AO75445 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
USH2AO75445 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
USH2AO75445 AC100797.4-201ENST00000631653 1827 ntBASIC11□□□□□ -0.65
USH2AO75445 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
USH2AO75445 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC11□□□□□ -0.65
USH2AO75445 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC11□□□□□ -0.65
USH2AO75445 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC11□□□□□ -0.65
USH2AO75445 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
USH2AO75445 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC11□□□□□ -0.65
USH2AO75445 AL359504.2-201ENST00000605506 1601 ntBASIC10.99□□□□□ -0.65
USH2AO75445 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
USH2AO75445 AC120024.1-201ENST00000562672 995 ntBASIC10.99□□□□□ -0.65
USH2AO75445 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
USH2AO75445 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC10.99□□□□□ -0.65
USH2AO75445 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
USH2AO75445 MIR939-201ENST00000401314 82 ntBASIC10.99□□□□□ -0.65
USH2AO75445 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
USH2AO75445 AL135925.1-201ENST00000605920 1701 ntBASIC10.99□□□□□ -0.65
USH2AO75445 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC10.99□□□□□ -0.65
USH2AO75445 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
USH2AO75445 ID1-201ENST00000376105 1233 ntBASIC10.98□□□□□ -0.65
USH2AO75445 AL356740.2-201ENST00000601559 647 ntBASIC10.98□□□□□ -0.65
USH2AO75445 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
USH2AO75445 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC10.98□□□□□ -0.65
USH2AO75445 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC10.98□□□□□ -0.65
USH2AO75445 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC10.98□□□□□ -0.65
USH2AO75445 SENP5-202ENST00000419026 973 ntTSL 3 BASIC10.98□□□□□ -0.65
USH2AO75445 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
USH2AO75445 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
USH2AO75445 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
USH2AO75445 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
USH2AO75445 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC10.97□□□□□ -0.65
USH2AO75445 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC10.97□□□□□ -0.65
USH2AO75445 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
USH2AO75445 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
USH2AO75445 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
USH2AO75445 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC10.97□□□□□ -0.65
USH2AO75445 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC10.97□□□□□ -0.65
USH2AO75445 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC10.97□□□□□ -0.65
USH2AO75445 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC10.96□□□□□ -0.65
USH2AO75445 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC10.96□□□□□ -0.65
USH2AO75445 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC10.96□□□□□ -0.65
USH2AO75445 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC10.96□□□□□ -0.65
USH2AO75445 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.65
USH2AO75445 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
USH2AO75445 CA15P2-201ENST00000611168 834 ntBASIC10.96□□□□□ -0.65
USH2AO75445 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC10.96□□□□□ -0.65
USH2AO75445 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
USH2AO75445 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
USH2AO75445 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC10.96□□□□□ -0.66
USH2AO75445 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC10.96□□□□□ -0.66
USH2AO75445 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC10.96□□□□□ -0.66
USH2AO75445 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
USH2AO75445 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.66
USH2AO75445 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
USH2AO75445 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC10.95□□□□□ -0.66
USH2AO75445 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
USH2AO75445 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC10.95□□□□□ -0.66
USH2AO75445 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
USH2AO75445 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
USH2AO75445 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
USH2AO75445 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC10.95□□□□□ -0.66
USH2AO75445 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
USH2AO75445 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC10.95□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms