Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC23.39■■□□□ 1.33
CUEDC1Q9NWM3 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC23.39■■□□□ 1.33
CUEDC1Q9NWM3 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CUEDC1Q9NWM3 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
CUEDC1Q9NWM3 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CUEDC1Q9NWM3 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
CUEDC1Q9NWM3 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CUEDC1Q9NWM3 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.37■■□□□ 1.33
CUEDC1Q9NWM3 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CUEDC1Q9NWM3 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.37■■□□□ 1.33
CUEDC1Q9NWM3 HYI-213ENST00000583037 1322 ntTSL 5 BASIC23.37■■□□□ 1.33
CUEDC1Q9NWM3 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CUEDC1Q9NWM3 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CUEDC1Q9NWM3 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CUEDC1Q9NWM3 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
CUEDC1Q9NWM3 AC026202.3-201ENST00000600805 1127 ntBASIC23.37■■□□□ 1.33
CUEDC1Q9NWM3 AC009831.1-201ENST00000580420 1582 ntBASIC23.36■■□□□ 1.33
CUEDC1Q9NWM3 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
CUEDC1Q9NWM3 GFER-205ENST00000569451 517 ntTSL 5 BASIC23.36■■□□□ 1.33
CUEDC1Q9NWM3 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CUEDC1Q9NWM3 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
CUEDC1Q9NWM3 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
CUEDC1Q9NWM3 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CUEDC1Q9NWM3 RAP2CP1-202ENST00000605179 643 ntBASIC23.35■■□□□ 1.33
CUEDC1Q9NWM3 AC091060.1-201ENST00000623524 1766 ntBASIC23.35■■□□□ 1.33
CUEDC1Q9NWM3 AC092803.2-201ENST00000564287 1899 ntBASIC23.34■■□□□ 1.33
CUEDC1Q9NWM3 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CUEDC1Q9NWM3 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CUEDC1Q9NWM3 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.34■■□□□ 1.33
CUEDC1Q9NWM3 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CUEDC1Q9NWM3 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CUEDC1Q9NWM3 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CUEDC1Q9NWM3 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CUEDC1Q9NWM3 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CUEDC1Q9NWM3 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC23.33■■□□□ 1.33
CUEDC1Q9NWM3 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
CUEDC1Q9NWM3 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.32
CUEDC1Q9NWM3 ERN1-208ENST00000606895 2068 ntBASIC23.32■■□□□ 1.32
CUEDC1Q9NWM3 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
CUEDC1Q9NWM3 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CUEDC1Q9NWM3 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CUEDC1Q9NWM3 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.32■■□□□ 1.32
CUEDC1Q9NWM3 U85056.1-201ENST00000616429 682 ntBASIC23.32■■□□□ 1.32
CUEDC1Q9NWM3 AC133552.2-201ENST00000619106 1032 ntBASIC23.32■■□□□ 1.32
CUEDC1Q9NWM3 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
CUEDC1Q9NWM3 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CUEDC1Q9NWM3 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
CUEDC1Q9NWM3 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CUEDC1Q9NWM3 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.32■■□□□ 1.32
CUEDC1Q9NWM3 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CUEDC1Q9NWM3 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CUEDC1Q9NWM3 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CUEDC1Q9NWM3 AL033527.3-201ENST00000566366 1196 ntBASIC23.31■■□□□ 1.32
CUEDC1Q9NWM3 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CUEDC1Q9NWM3 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.3■■□□□ 1.32
CUEDC1Q9NWM3 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC23.3■■□□□ 1.32
CUEDC1Q9NWM3 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CUEDC1Q9NWM3 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CUEDC1Q9NWM3 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.29■■□□□ 1.32
CUEDC1Q9NWM3 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CUEDC1Q9NWM3 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC23.29■■□□□ 1.32
CUEDC1Q9NWM3 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CUEDC1Q9NWM3 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CUEDC1Q9NWM3 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CUEDC1Q9NWM3 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CUEDC1Q9NWM3 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.28■■□□□ 1.32
CUEDC1Q9NWM3 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC23.28■■□□□ 1.32
CUEDC1Q9NWM3 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
CUEDC1Q9NWM3 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CUEDC1Q9NWM3 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CUEDC1Q9NWM3 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
CUEDC1Q9NWM3 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CUEDC1Q9NWM3 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.28■■□□□ 1.32
CUEDC1Q9NWM3 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CUEDC1Q9NWM3 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC23.27■■□□□ 1.32
CUEDC1Q9NWM3 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
CUEDC1Q9NWM3 HES4-204ENST00000484667 667 ntTSL 3 BASIC23.27■■□□□ 1.32
CUEDC1Q9NWM3 AL592293.1-201ENST00000502889 1188 ntBASIC23.27■■□□□ 1.32
CUEDC1Q9NWM3 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CUEDC1Q9NWM3 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
CUEDC1Q9NWM3 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
CUEDC1Q9NWM3 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
CUEDC1Q9NWM3 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.26■■□□□ 1.31
CUEDC1Q9NWM3 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC23.26■■□□□ 1.31
CUEDC1Q9NWM3 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
CUEDC1Q9NWM3 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC23.26■■□□□ 1.31
CUEDC1Q9NWM3 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
CUEDC1Q9NWM3 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CUEDC1Q9NWM3 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.26■■□□□ 1.31
CUEDC1Q9NWM3 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.26■■□□□ 1.31
CUEDC1Q9NWM3 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CUEDC1Q9NWM3 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CUEDC1Q9NWM3 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.25■■□□□ 1.31
CUEDC1Q9NWM3 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CUEDC1Q9NWM3 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
CUEDC1Q9NWM3 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
CUEDC1Q9NWM3 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CUEDC1Q9NWM3 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CUEDC1Q9NWM3 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.24■■□□□ 1.31
CUEDC1Q9NWM3 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms