Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RPS2P7-201ENST00000447334 885 ntBASIC23.77■■□□□ 1.4
LMX1AQ8TE12 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
LMX1AQ8TE12 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
LMX1AQ8TE12 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC23.76■■□□□ 1.39
LMX1AQ8TE12 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC23.76■■□□□ 1.39
LMX1AQ8TE12 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LMX1AQ8TE12 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC23.76■■□□□ 1.39
LMX1AQ8TE12 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
LMX1AQ8TE12 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
LMX1AQ8TE12 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.75■■□□□ 1.39
LMX1AQ8TE12 BX255925.1-201ENST00000566954 1854 ntBASIC23.75■■□□□ 1.39
LMX1AQ8TE12 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LMX1AQ8TE12 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LMX1AQ8TE12 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
LMX1AQ8TE12 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
LMX1AQ8TE12 AC103724.3-201ENST00000564481 992 ntBASIC23.75■■□□□ 1.39
LMX1AQ8TE12 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC23.75■■□□□ 1.39
LMX1AQ8TE12 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
LMX1AQ8TE12 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
LMX1AQ8TE12 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC23.75■■□□□ 1.39
LMX1AQ8TE12 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
LMX1AQ8TE12 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
LMX1AQ8TE12 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
LMX1AQ8TE12 AL031848.2-201ENST00000607670 837 ntBASIC23.74■■□□□ 1.39
LMX1AQ8TE12 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
LMX1AQ8TE12 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
LMX1AQ8TE12 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
LMX1AQ8TE12 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
LMX1AQ8TE12 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LMX1AQ8TE12 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC23.73■■□□□ 1.39
LMX1AQ8TE12 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
LMX1AQ8TE12 AC019171.1-201ENST00000601251 1056 ntBASIC23.73■■□□□ 1.39
LMX1AQ8TE12 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LMX1AQ8TE12 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LMX1AQ8TE12 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LMX1AQ8TE12 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
LMX1AQ8TE12 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
LMX1AQ8TE12 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
LMX1AQ8TE12 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LMX1AQ8TE12 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
LMX1AQ8TE12 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC23.72■■□□□ 1.39
LMX1AQ8TE12 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LMX1AQ8TE12 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC23.72■■□□□ 1.39
LMX1AQ8TE12 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.71■■□□□ 1.39
LMX1AQ8TE12 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
LMX1AQ8TE12 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
LMX1AQ8TE12 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
LMX1AQ8TE12 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
LMX1AQ8TE12 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
LMX1AQ8TE12 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
LMX1AQ8TE12 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
LMX1AQ8TE12 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
LMX1AQ8TE12 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
LMX1AQ8TE12 AC142472.1-201ENST00000612013 1741 ntBASIC23.7■■□□□ 1.39
LMX1AQ8TE12 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
LMX1AQ8TE12 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
LMX1AQ8TE12 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
LMX1AQ8TE12 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
LMX1AQ8TE12 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
LMX1AQ8TE12 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
LMX1AQ8TE12 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC23.69■■□□□ 1.38
LMX1AQ8TE12 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC23.69■■□□□ 1.38
LMX1AQ8TE12 LONRF2P2-201ENST00000439212 571 ntBASIC23.69■■□□□ 1.38
LMX1AQ8TE12 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
LMX1AQ8TE12 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
LMX1AQ8TE12 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.68■■□□□ 1.38
LMX1AQ8TE12 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
LMX1AQ8TE12 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
LMX1AQ8TE12 PRTG-204ENST00000561292 833 ntTSL 3 BASIC23.68■■□□□ 1.38
LMX1AQ8TE12 HES6-204ENST00000409182 863 ntTSL 2 BASIC23.67■■□□□ 1.38
LMX1AQ8TE12 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
LMX1AQ8TE12 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
LMX1AQ8TE12 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC23.67■■□□□ 1.38
LMX1AQ8TE12 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.67■■□□□ 1.38
LMX1AQ8TE12 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
LMX1AQ8TE12 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
LMX1AQ8TE12 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
LMX1AQ8TE12 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
LMX1AQ8TE12 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
LMX1AQ8TE12 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
LMX1AQ8TE12 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
LMX1AQ8TE12 AP004609.3-201ENST00000610705 1884 ntBASIC23.66■■□□□ 1.38
LMX1AQ8TE12 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.65■■□□□ 1.38
LMX1AQ8TE12 KRT18P10-201ENST00000388836 1287 ntBASIC23.65■■□□□ 1.38
LMX1AQ8TE12 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
LMX1AQ8TE12 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
LMX1AQ8TE12 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
LMX1AQ8TE12 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
LMX1AQ8TE12 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
LMX1AQ8TE12 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
LMX1AQ8TE12 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
LMX1AQ8TE12 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
LMX1AQ8TE12 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
LMX1AQ8TE12 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
LMX1AQ8TE12 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC23.64■■□□□ 1.37
LMX1AQ8TE12 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC23.64■■□□□ 1.37
LMX1AQ8TE12 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
LMX1AQ8TE12 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
LMX1AQ8TE12 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC23.63■■□□□ 1.37
LMX1AQ8TE12 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.63■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms