Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ALMS1Q8TCU4 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ALMS1Q8TCU4 TSPY9P-201ENST00000440215 945 ntBASIC16.72■□□□□ 0.27
ALMS1Q8TCU4 TSPY11P-201ENST00000442607 1045 ntBASIC16.72■□□□□ 0.27
ALMS1Q8TCU4 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC16.72■□□□□ 0.27
ALMS1Q8TCU4 TRIR-202ENST00000588213 841 ntTSL 3 BASIC16.72■□□□□ 0.27
ALMS1Q8TCU4 AC092666.2-201ENST00000613287 246 ntBASIC16.72■□□□□ 0.27
ALMS1Q8TCU4 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC16.71■□□□□ 0.27
ALMS1Q8TCU4 AC137630.3-201ENST00000607245 391 ntBASIC16.71■□□□□ 0.27
ALMS1Q8TCU4 AP002414.2-202ENST00000590929 1450 ntBASIC16.71■□□□□ 0.27
ALMS1Q8TCU4 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
ALMS1Q8TCU4 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC16.71■□□□□ 0.27
ALMS1Q8TCU4 MIR4466-201ENST00000606121 54 ntBASIC16.71■□□□□ 0.27
ALMS1Q8TCU4 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
ALMS1Q8TCU4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC16.71■□□□□ 0.27
ALMS1Q8TCU4 AC092028.1-203ENST00000608262 953 ntBASIC16.71■□□□□ 0.27
ALMS1Q8TCU4 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
ALMS1Q8TCU4 AC021242.3-201ENST00000607598 1377 ntBASIC16.7■□□□□ 0.26
ALMS1Q8TCU4 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC16.7■□□□□ 0.26
ALMS1Q8TCU4 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ALMS1Q8TCU4 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC16.7■□□□□ 0.26
ALMS1Q8TCU4 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
ALMS1Q8TCU4 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
ALMS1Q8TCU4 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
ALMS1Q8TCU4 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC16.69■□□□□ 0.26
ALMS1Q8TCU4 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ALMS1Q8TCU4 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ALMS1Q8TCU4 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
ALMS1Q8TCU4 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ALMS1Q8TCU4 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ALMS1Q8TCU4 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC16.69■□□□□ 0.26
ALMS1Q8TCU4 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC16.69■□□□□ 0.26
ALMS1Q8TCU4 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
ALMS1Q8TCU4 AC026271.2-201ENST00000428091 497 ntBASIC16.68■□□□□ 0.26
ALMS1Q8TCU4 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC16.68■□□□□ 0.26
ALMS1Q8TCU4 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
ALMS1Q8TCU4 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
ALMS1Q8TCU4 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC16.68■□□□□ 0.26
ALMS1Q8TCU4 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ALMS1Q8TCU4 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC16.67■□□□□ 0.26
ALMS1Q8TCU4 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ALMS1Q8TCU4 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ALMS1Q8TCU4 MIR3621-201ENST00000580529 85 ntBASIC16.67■□□□□ 0.26
ALMS1Q8TCU4 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ALMS1Q8TCU4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ALMS1Q8TCU4 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
ALMS1Q8TCU4 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ALMS1Q8TCU4 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC16.67■□□□□ 0.26
ALMS1Q8TCU4 AC135279.3-201ENST00000610945 1311 ntBASIC16.66■□□□□ 0.26
ALMS1Q8TCU4 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ALMS1Q8TCU4 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC16.66■□□□□ 0.26
ALMS1Q8TCU4 AC120024.1-201ENST00000562672 995 ntBASIC16.66■□□□□ 0.26
ALMS1Q8TCU4 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
ALMS1Q8TCU4 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
ALMS1Q8TCU4 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ALMS1Q8TCU4 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ALMS1Q8TCU4 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
ALMS1Q8TCU4 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC16.66■□□□□ 0.26
ALMS1Q8TCU4 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC16.66■□□□□ 0.26
ALMS1Q8TCU4 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ALMS1Q8TCU4 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
ALMS1Q8TCU4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC16.65■□□□□ 0.26
ALMS1Q8TCU4 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
ALMS1Q8TCU4 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ALMS1Q8TCU4 ST7-AS1-201ENST00000456775 1889 ntBASIC16.65■□□□□ 0.26
ALMS1Q8TCU4 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ALMS1Q8TCU4 EBPL-204ENST00000378272 766 ntTSL 3 BASIC16.65■□□□□ 0.26
ALMS1Q8TCU4 QDPR-206ENST00000508623 601 ntTSL 3 BASIC16.65■□□□□ 0.26
ALMS1Q8TCU4 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC16.65■□□□□ 0.26
ALMS1Q8TCU4 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ALMS1Q8TCU4 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
ALMS1Q8TCU4 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC16.64■□□□□ 0.25
ALMS1Q8TCU4 AL031432.3-201ENST00000607698 485 ntBASIC16.64■□□□□ 0.25
ALMS1Q8TCU4 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC16.64■□□□□ 0.25
ALMS1Q8TCU4 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
ALMS1Q8TCU4 WHAMMP3-201ENST00000611636 1609 ntBASIC16.64■□□□□ 0.25
ALMS1Q8TCU4 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC16.64■□□□□ 0.25
ALMS1Q8TCU4 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
ALMS1Q8TCU4 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
ALMS1Q8TCU4 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
ALMS1Q8TCU4 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
ALMS1Q8TCU4 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ALMS1Q8TCU4 MIR4281-201ENST00000580852 62 ntBASIC16.63■□□□□ 0.25
ALMS1Q8TCU4 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
ALMS1Q8TCU4 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
ALMS1Q8TCU4 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
ALMS1Q8TCU4 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
ALMS1Q8TCU4 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
ALMS1Q8TCU4 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
ALMS1Q8TCU4 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
ALMS1Q8TCU4 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
ALMS1Q8TCU4 AC133561.4-201ENST00000566112 224 ntBASIC16.62■□□□□ 0.25
ALMS1Q8TCU4 LSM4-201ENST00000252816 986 ntTSL 2 BASIC16.62■□□□□ 0.25
ALMS1Q8TCU4 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
ALMS1Q8TCU4 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC16.62■□□□□ 0.25
ALMS1Q8TCU4 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
ALMS1Q8TCU4 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ALMS1Q8TCU4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC16.61■□□□□ 0.25
ALMS1Q8TCU4 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
ALMS1Q8TCU4 TK2-202ENST00000417693 1046 ntTSL 2 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms