Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC26.23■■□□□ 1.79
CHD9Q3L8U1 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CHD9Q3L8U1 AC005837.3-201ENST00000612163 286 ntBASIC26.23■■□□□ 1.79
CHD9Q3L8U1 AC092666.2-201ENST00000613287 246 ntBASIC26.23■■□□□ 1.79
CHD9Q3L8U1 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC26.23■■□□□ 1.79
CHD9Q3L8U1 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CHD9Q3L8U1 WHAMMP3-201ENST00000611636 1609 ntBASIC26.23■■□□□ 1.79
CHD9Q3L8U1 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
CHD9Q3L8U1 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CHD9Q3L8U1 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
CHD9Q3L8U1 AC021242.3-201ENST00000607598 1377 ntBASIC26.22■■□□□ 1.79
CHD9Q3L8U1 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
CHD9Q3L8U1 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC26.21■■□□□ 1.79
CHD9Q3L8U1 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
CHD9Q3L8U1 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
CHD9Q3L8U1 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC26.21■■□□□ 1.79
CHD9Q3L8U1 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CHD9Q3L8U1 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC26.21■■□□□ 1.79
CHD9Q3L8U1 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
CHD9Q3L8U1 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
CHD9Q3L8U1 TRIR-202ENST00000588213 841 ntTSL 3 BASIC26.2■■□□□ 1.78
CHD9Q3L8U1 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC26.2■■□□□ 1.78
CHD9Q3L8U1 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CHD9Q3L8U1 RARRES2P6-201ENST00000567333 442 ntBASIC26.19■■□□□ 1.78
CHD9Q3L8U1 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CHD9Q3L8U1 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC26.19■■□□□ 1.78
CHD9Q3L8U1 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC26.19■■□□□ 1.78
CHD9Q3L8U1 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CHD9Q3L8U1 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC26.18■■□□□ 1.78
CHD9Q3L8U1 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CHD9Q3L8U1 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
CHD9Q3L8U1 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
CHD9Q3L8U1 AC026271.2-201ENST00000428091 497 ntBASIC26.18■■□□□ 1.78
CHD9Q3L8U1 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CHD9Q3L8U1 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC26.17■■□□□ 1.78
CHD9Q3L8U1 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC26.17■■□□□ 1.78
CHD9Q3L8U1 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.17■■□□□ 1.78
CHD9Q3L8U1 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
CHD9Q3L8U1 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CHD9Q3L8U1 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
CHD9Q3L8U1 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC26.17■■□□□ 1.78
CHD9Q3L8U1 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC26.17■■□□□ 1.78
CHD9Q3L8U1 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
CHD9Q3L8U1 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC26.16■■□□□ 1.78
CHD9Q3L8U1 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CHD9Q3L8U1 AL136116.3-201ENST00000402907 1138 ntBASIC26.16■■□□□ 1.78
CHD9Q3L8U1 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CHD9Q3L8U1 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CHD9Q3L8U1 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC26.16■■□□□ 1.78
CHD9Q3L8U1 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CHD9Q3L8U1 KRT18P24-201ENST00000344739 1156 ntBASIC26.15■■□□□ 1.78
CHD9Q3L8U1 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
CHD9Q3L8U1 AC137630.3-201ENST00000607245 391 ntBASIC26.15■■□□□ 1.78
CHD9Q3L8U1 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CHD9Q3L8U1 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC26.14■■□□□ 1.78
CHD9Q3L8U1 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC26.14■■□□□ 1.78
CHD9Q3L8U1 TSPY9P-201ENST00000440215 945 ntBASIC26.14■■□□□ 1.78
CHD9Q3L8U1 TSPY11P-201ENST00000442607 1045 ntBASIC26.14■■□□□ 1.78
CHD9Q3L8U1 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC26.14■■□□□ 1.78
CHD9Q3L8U1 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26.14■■□□□ 1.78
CHD9Q3L8U1 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC26.14■■□□□ 1.77
CHD9Q3L8U1 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC26.14■■□□□ 1.77
CHD9Q3L8U1 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CHD9Q3L8U1 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC26.13■■□□□ 1.77
CHD9Q3L8U1 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC26.13■■□□□ 1.77
CHD9Q3L8U1 AC133561.4-201ENST00000566112 224 ntBASIC26.13■■□□□ 1.77
CHD9Q3L8U1 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC26.13■■□□□ 1.77
CHD9Q3L8U1 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC26.13■■□□□ 1.77
CHD9Q3L8U1 AC092028.1-203ENST00000608262 953 ntBASIC26.13■■□□□ 1.77
CHD9Q3L8U1 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC26.12■■□□□ 1.77
CHD9Q3L8U1 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC26.12■■□□□ 1.77
CHD9Q3L8U1 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC26.12■■□□□ 1.77
CHD9Q3L8U1 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC26.12■■□□□ 1.77
CHD9Q3L8U1 ZNRF2P3-201ENST00000424200 374 ntBASIC26.12■■□□□ 1.77
CHD9Q3L8U1 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC26.12■■□□□ 1.77
CHD9Q3L8U1 QDPR-206ENST00000508623 601 ntTSL 3 BASIC26.12■■□□□ 1.77
CHD9Q3L8U1 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CHD9Q3L8U1 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
CHD9Q3L8U1 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CHD9Q3L8U1 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CHD9Q3L8U1 AL117332.1-201ENST00000622628 974 ntBASIC26.12■■□□□ 1.77
CHD9Q3L8U1 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC26.12■■□□□ 1.77
CHD9Q3L8U1 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CHD9Q3L8U1 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
CHD9Q3L8U1 RPP21-222ENST00000433076 577 ntTSL 2 BASIC26.11■■□□□ 1.77
CHD9Q3L8U1 AC096631.2-201ENST00000436136 790 ntBASIC26.11■■□□□ 1.77
CHD9Q3L8U1 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CHD9Q3L8U1 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC26.11■■□□□ 1.77
CHD9Q3L8U1 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC26.1■■□□□ 1.77
CHD9Q3L8U1 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
CHD9Q3L8U1 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.1■■□□□ 1.77
CHD9Q3L8U1 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC26.1■■□□□ 1.77
CHD9Q3L8U1 AP002414.2-202ENST00000590929 1450 ntBASIC26.1■■□□□ 1.77
CHD9Q3L8U1 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
CHD9Q3L8U1 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CHD9Q3L8U1 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC26.1■■□□□ 1.77
CHD9Q3L8U1 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
CHD9Q3L8U1 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC26.09■■□□□ 1.77
CHD9Q3L8U1 AL512631.2-201ENST00000604634 923 ntBASIC26.09■■□□□ 1.77
CHD9Q3L8U1 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms