Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC26.43■■□□□ 1.82
TTC3P53804 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
TTC3P53804 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
TTC3P53804 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
TTC3P53804 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC26.42■■□□□ 1.82
TTC3P53804 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC26.42■■□□□ 1.82
TTC3P53804 Z92544.1-202ENST00000571933 1220 ntBASIC26.42■■□□□ 1.82
TTC3P53804 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
TTC3P53804 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
TTC3P53804 MTURN-203ENST00000409688 843 ntTSL 2 BASIC26.41■■□□□ 1.82
TTC3P53804 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
TTC3P53804 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC26.41■■□□□ 1.82
TTC3P53804 AL449106.1-201ENST00000608517 1980 ntBASIC26.41■■□□□ 1.82
TTC3P53804 AC019069.1-201ENST00000610008 1333 ntBASIC26.41■■□□□ 1.82
TTC3P53804 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
TTC3P53804 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
TTC3P53804 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
TTC3P53804 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC26.4■■□□□ 1.82
TTC3P53804 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC26.4■■□□□ 1.82
TTC3P53804 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
TTC3P53804 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC26.39■■□□□ 1.82
TTC3P53804 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
TTC3P53804 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
TTC3P53804 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC26.39■■□□□ 1.81
TTC3P53804 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
TTC3P53804 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
TTC3P53804 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
TTC3P53804 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.38■■□□□ 1.81
TTC3P53804 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
TTC3P53804 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
TTC3P53804 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
TTC3P53804 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC26.37■■□□□ 1.81
TTC3P53804 LINC01003-201ENST00000564834 1764 ntBASIC26.37■■□□□ 1.81
TTC3P53804 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
TTC3P53804 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
TTC3P53804 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
TTC3P53804 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
TTC3P53804 RNF146-205ENST00000477776 762 ntTSL 3 BASIC26.36■■□□□ 1.81
TTC3P53804 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
TTC3P53804 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC26.36■■□□□ 1.81
TTC3P53804 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC26.36■■□□□ 1.81
TTC3P53804 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC26.36■■□□□ 1.81
TTC3P53804 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
TTC3P53804 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC26.35■■□□□ 1.81
TTC3P53804 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
TTC3P53804 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC26.35■■□□□ 1.81
TTC3P53804 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC26.35■■□□□ 1.81
TTC3P53804 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC26.35■■□□□ 1.81
TTC3P53804 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC26.35■■□□□ 1.81
TTC3P53804 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
TTC3P53804 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC26.34■■□□□ 1.81
TTC3P53804 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
TTC3P53804 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
TTC3P53804 AL356441.2-201ENST00000443009 864 ntBASIC26.34■■□□□ 1.81
TTC3P53804 AC022616.5-201ENST00000518796 181 ntBASIC26.34■■□□□ 1.81
TTC3P53804 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
TTC3P53804 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
TTC3P53804 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
TTC3P53804 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
TTC3P53804 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
TTC3P53804 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC26.34■■□□□ 1.81
TTC3P53804 AC239859.2-201ENST00000444165 318 ntBASIC26.34■■□□□ 1.81
TTC3P53804 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC26.34■■□□□ 1.81
TTC3P53804 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC26.34■■□□□ 1.81
TTC3P53804 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
TTC3P53804 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
TTC3P53804 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
TTC3P53804 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
TTC3P53804 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
TTC3P53804 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
TTC3P53804 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
TTC3P53804 LONRF2P2-201ENST00000439212 571 ntBASIC26.31■■□□□ 1.8
TTC3P53804 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
TTC3P53804 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
TTC3P53804 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TTC3P53804 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
TTC3P53804 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC26.3■■□□□ 1.8
TTC3P53804 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
TTC3P53804 KRT18P10-201ENST00000388836 1287 ntBASIC26.29■■□□□ 1.8
TTC3P53804 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC26.29■■□□□ 1.8
TTC3P53804 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC26.29■■□□□ 1.8
TTC3P53804 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC26.29■■□□□ 1.8
TTC3P53804 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
TTC3P53804 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
TTC3P53804 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
TTC3P53804 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
TTC3P53804 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
TTC3P53804 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC26.28■■□□□ 1.8
TTC3P53804 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
TTC3P53804 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
TTC3P53804 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
TTC3P53804 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC26.27■■□□□ 1.8
TTC3P53804 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
TTC3P53804 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC26.26■■□□□ 1.8
TTC3P53804 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC26.26■■□□□ 1.8
TTC3P53804 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
TTC3P53804 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
TTC3P53804 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
TTC3P53804 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
TTC3P53804 CREM-229ENST00000474362 1030 ntTSL 2 BASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms