Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
VPS13AQ96RL7 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC24.62■■□□□ 1.53
VPS13AQ96RL7 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
VPS13AQ96RL7 MIR4466-201ENST00000606121 54 ntBASIC24.62■■□□□ 1.53
VPS13AQ96RL7 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC24.61■■□□□ 1.53
VPS13AQ96RL7 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
VPS13AQ96RL7 AC133561.4-201ENST00000566112 224 ntBASIC24.61■■□□□ 1.53
VPS13AQ96RL7 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC24.6■■□□□ 1.53
VPS13AQ96RL7 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC24.6■■□□□ 1.53
VPS13AQ96RL7 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
VPS13AQ96RL7 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC24.6■■□□□ 1.53
VPS13AQ96RL7 AC087393.1-201ENST00000582896 145 ntBASIC24.6■■□□□ 1.53
VPS13AQ96RL7 TRIR-202ENST00000588213 841 ntTSL 3 BASIC24.6■■□□□ 1.53
VPS13AQ96RL7 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
VPS13AQ96RL7 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC24.6■■□□□ 1.53
VPS13AQ96RL7 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC24.59■■□□□ 1.53
VPS13AQ96RL7 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
VPS13AQ96RL7 KRT16P3-201ENST00000439127 1283 ntBASIC24.59■■□□□ 1.53
VPS13AQ96RL7 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC24.59■■□□□ 1.53
VPS13AQ96RL7 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC24.59■■□□□ 1.53
VPS13AQ96RL7 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC24.59■■□□□ 1.53
VPS13AQ96RL7 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
VPS13AQ96RL7 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
VPS13AQ96RL7 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC24.58■■□□□ 1.53
VPS13AQ96RL7 AC022616.5-201ENST00000518796 181 ntBASIC24.58■■□□□ 1.53
VPS13AQ96RL7 AC104564.3-201ENST00000582367 638 ntBASIC24.58■■□□□ 1.53
VPS13AQ96RL7 AL136116.3-201ENST00000402907 1138 ntBASIC24.58■■□□□ 1.52
VPS13AQ96RL7 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC24.58■■□□□ 1.52
VPS13AQ96RL7 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC24.58■■□□□ 1.52
VPS13AQ96RL7 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
VPS13AQ96RL7 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
VPS13AQ96RL7 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
VPS13AQ96RL7 ABCB10P3-201ENST00000561950 2166 ntBASIC24.56■■□□□ 1.52
VPS13AQ96RL7 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
VPS13AQ96RL7 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC24.56■■□□□ 1.52
VPS13AQ96RL7 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC24.56■■□□□ 1.52
VPS13AQ96RL7 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
VPS13AQ96RL7 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
VPS13AQ96RL7 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC24.56■■□□□ 1.52
VPS13AQ96RL7 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
VPS13AQ96RL7 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC24.55■■□□□ 1.52
VPS13AQ96RL7 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
VPS13AQ96RL7 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
VPS13AQ96RL7 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS13AQ96RL7 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS13AQ96RL7 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC24.54■■□□□ 1.52
VPS13AQ96RL7 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS13AQ96RL7 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
VPS13AQ96RL7 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
VPS13AQ96RL7 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS13AQ96RL7 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC24.53■■□□□ 1.52
VPS13AQ96RL7 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC24.53■■□□□ 1.52
VPS13AQ96RL7 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.53■■□□□ 1.52
VPS13AQ96RL7 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
VPS13AQ96RL7 BX664725.1-201ENST00000438252 379 ntBASIC24.52■■□□□ 1.52
VPS13AQ96RL7 AC096631.2-201ENST00000436136 790 ntBASIC24.52■■□□□ 1.52
VPS13AQ96RL7 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
VPS13AQ96RL7 AC135279.3-201ENST00000610945 1311 ntBASIC24.51■■□□□ 1.51
VPS13AQ96RL7 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC24.51■■□□□ 1.51
VPS13AQ96RL7 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
VPS13AQ96RL7 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
VPS13AQ96RL7 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC24.51■■□□□ 1.51
VPS13AQ96RL7 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC24.51■■□□□ 1.51
VPS13AQ96RL7 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
VPS13AQ96RL7 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
VPS13AQ96RL7 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 GUK1-205ENST00000366722 850 ntTSL 3 BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 EBPL-204ENST00000378272 766 ntTSL 3 BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
VPS13AQ96RL7 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
VPS13AQ96RL7 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
VPS13AQ96RL7 AL359504.2-201ENST00000605506 1601 ntBASIC24.49■■□□□ 1.51
VPS13AQ96RL7 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.49■■□□□ 1.51
VPS13AQ96RL7 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
VPS13AQ96RL7 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 MIR5787-201ENST00000611784 55 ntBASIC24.48■■□□□ 1.51
VPS13AQ96RL7 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.47■■□□□ 1.51
VPS13AQ96RL7 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
VPS13AQ96RL7 ST7-AS1-201ENST00000456775 1889 ntBASIC24.47■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 241.8 ms