Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USF1P22415 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.59■□□□□ 0.89
USF1P22415 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USF1P22415 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USF1P22415 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.59■□□□□ 0.89
USF1P22415 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
USF1P22415 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.58■□□□□ 0.89
USF1P22415 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
USF1P22415 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
USF1P22415 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USF1P22415 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USF1P22415 KRT8P33-201ENST00000508125 1423 ntBASIC20.57■□□□□ 0.88
USF1P22415 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.57■□□□□ 0.88
USF1P22415 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
USF1P22415 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.57■□□□□ 0.88
USF1P22415 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
USF1P22415 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
USF1P22415 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
USF1P22415 YBX1P4-201ENST00000392794 808 ntBASIC20.56■□□□□ 0.88
USF1P22415 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.56■□□□□ 0.88
USF1P22415 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USF1P22415 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
USF1P22415 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.56■□□□□ 0.88
USF1P22415 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.56■□□□□ 0.88
USF1P22415 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USF1P22415 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USF1P22415 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
USF1P22415 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
USF1P22415 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
USF1P22415 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USF1P22415 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.54■□□□□ 0.88
USF1P22415 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USF1P22415 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC20.54■□□□□ 0.88
USF1P22415 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USF1P22415 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.54■□□□□ 0.88
USF1P22415 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC20.54■□□□□ 0.88
USF1P22415 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.54■□□□□ 0.88
USF1P22415 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USF1P22415 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.54■□□□□ 0.88
USF1P22415 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USF1P22415 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.54■□□□□ 0.88
USF1P22415 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
USF1P22415 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USF1P22415 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
USF1P22415 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
USF1P22415 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USF1P22415 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USF1P22415 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USF1P22415 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
USF1P22415 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USF1P22415 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USF1P22415 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.52■□□□□ 0.88
USF1P22415 AL359504.2-201ENST00000605506 1601 ntBASIC20.52■□□□□ 0.88
USF1P22415 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
USF1P22415 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
USF1P22415 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USF1P22415 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
USF1P22415 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USF1P22415 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.51■□□□□ 0.87
USF1P22415 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USF1P22415 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USF1P22415 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
USF1P22415 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.5■□□□□ 0.87
USF1P22415 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USF1P22415 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.5■□□□□ 0.87
USF1P22415 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USF1P22415 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
USF1P22415 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USF1P22415 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
USF1P22415 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
USF1P22415 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USF1P22415 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USF1P22415 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USF1P22415 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USF1P22415 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USF1P22415 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USF1P22415 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
USF1P22415 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.48■□□□□ 0.87
USF1P22415 BX255925.1-201ENST00000566954 1854 ntBASIC20.48■□□□□ 0.87
USF1P22415 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USF1P22415 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USF1P22415 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.48■□□□□ 0.87
USF1P22415 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USF1P22415 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
USF1P22415 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.47■□□□□ 0.87
USF1P22415 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
USF1P22415 WHAMMP3-201ENST00000611636 1609 ntBASIC20.46■□□□□ 0.87
USF1P22415 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USF1P22415 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
USF1P22415 AC009299.2-201ENST00000482477 511 ntBASIC20.46■□□□□ 0.87
USF1P22415 AC103834.1-201ENST00000520383 144 ntBASIC20.46■□□□□ 0.87
USF1P22415 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USF1P22415 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USF1P22415 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USF1P22415 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.45■□□□□ 0.86
USF1P22415 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
USF1P22415 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
USF1P22415 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
USF1P22415 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
USF1P22415 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms