Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SSX4O60224 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.85■■□□□ 1.09
SSX4O60224 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SSX4O60224 GPX1-201ENST00000419349 1106 ntBASIC21.85■■□□□ 1.09
SSX4O60224 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SSX4O60224 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.85■■□□□ 1.09
SSX4O60224 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
SSX4O60224 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.85■■□□□ 1.09
SSX4O60224 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
SSX4O60224 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC21.85■■□□□ 1.09
SSX4O60224 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
SSX4O60224 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SSX4O60224 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
SSX4O60224 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
SSX4O60224 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
SSX4O60224 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SSX4O60224 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SSX4O60224 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SSX4O60224 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
SSX4O60224 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SSX4O60224 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.83■■□□□ 1.09
SSX4O60224 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.83■■□□□ 1.09
SSX4O60224 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
SSX4O60224 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.83■■□□□ 1.09
SSX4O60224 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.83■■□□□ 1.09
SSX4O60224 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.82■■□□□ 1.08
SSX4O60224 RARRES2P2-201ENST00000394842 485 ntBASIC21.82■■□□□ 1.08
SSX4O60224 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.82■■□□□ 1.08
SSX4O60224 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX4O60224 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX4O60224 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SSX4O60224 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
SSX4O60224 AC127502.1-201ENST00000399971 1502 ntBASIC21.81■■□□□ 1.08
SSX4O60224 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.81■■□□□ 1.08
SSX4O60224 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
SSX4O60224 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SSX4O60224 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SSX4O60224 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SSX4O60224 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SSX4O60224 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SSX4O60224 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.8■■□□□ 1.08
SSX4O60224 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SSX4O60224 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
SSX4O60224 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SSX4O60224 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SSX4O60224 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SSX4O60224 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SSX4O60224 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SSX4O60224 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SSX4O60224 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
SSX4O60224 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
SSX4O60224 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
SSX4O60224 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.79■■□□□ 1.08
SSX4O60224 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SSX4O60224 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
SSX4O60224 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SSX4O60224 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.78■■□□□ 1.08
SSX4O60224 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
SSX4O60224 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SSX4O60224 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC21.78■■□□□ 1.08
SSX4O60224 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SSX4O60224 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SSX4O60224 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SSX4O60224 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.77■■□□□ 1.08
SSX4O60224 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
SSX4O60224 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
SSX4O60224 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SSX4O60224 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
SSX4O60224 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SSX4O60224 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SSX4O60224 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
SSX4O60224 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SSX4O60224 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.07
SSX4O60224 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.77■■□□□ 1.07
SSX4O60224 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SSX4O60224 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.76■■□□□ 1.07
SSX4O60224 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
SSX4O60224 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SSX4O60224 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC21.76■■□□□ 1.07
SSX4O60224 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
SSX4O60224 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SSX4O60224 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SSX4O60224 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SSX4O60224 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.75■■□□□ 1.07
SSX4O60224 ABHD17AP5-201ENST00000580133 923 ntBASIC21.75■■□□□ 1.07
SSX4O60224 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
SSX4O60224 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
SSX4O60224 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.75■■□□□ 1.07
SSX4O60224 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.75■■□□□ 1.07
SSX4O60224 RNF126P1-201ENST00000567452 1320 ntBASIC21.75■■□□□ 1.07
SSX4O60224 DUSP8P4-201ENST00000399538 1761 ntBASIC21.74■■□□□ 1.07
SSX4O60224 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
SSX4O60224 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SSX4O60224 AC022413.1-201ENST00000624602 984 ntBASIC21.74■■□□□ 1.07
SSX4O60224 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.74■■□□□ 1.07
SSX4O60224 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SSX4O60224 WHAMMP2-203ENST00000563942 1603 ntBASIC21.73■■□□□ 1.07
SSX4O60224 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SSX4O60224 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
SSX4O60224 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms