Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV40A0A0B4J280 AC139795.1-202ENST00000500444 432 ntBASIC19.92■□□□□ 0.78
TRAV40A0A0B4J280 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV40A0A0B4J280 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
TRAV40A0A0B4J280 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
TRAV40A0A0B4J280 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC19.91■□□□□ 0.78
TRAV40A0A0B4J280 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
TRAV40A0A0B4J280 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.91■□□□□ 0.78
TRAV40A0A0B4J280 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV40A0A0B4J280 BX255925.1-201ENST00000566954 1854 ntBASIC19.9■□□□□ 0.78
TRAV40A0A0B4J280 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
TRAV40A0A0B4J280 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV40A0A0B4J280 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC19.9■□□□□ 0.78
TRAV40A0A0B4J280 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC19.9■□□□□ 0.78
TRAV40A0A0B4J280 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC19.9■□□□□ 0.78
TRAV40A0A0B4J280 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV40A0A0B4J280 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
TRAV40A0A0B4J280 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV40A0A0B4J280 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV40A0A0B4J280 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
TRAV40A0A0B4J280 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRAV40A0A0B4J280 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.88■□□□□ 0.77
TRAV40A0A0B4J280 AC010980.1-201ENST00000587192 1142 ntBASIC19.88■□□□□ 0.77
TRAV40A0A0B4J280 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC19.88■□□□□ 0.77
TRAV40A0A0B4J280 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRAV40A0A0B4J280 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRAV40A0A0B4J280 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRAV40A0A0B4J280 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TRAV40A0A0B4J280 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV40A0A0B4J280 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV40A0A0B4J280 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV40A0A0B4J280 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.86■□□□□ 0.77
TRAV40A0A0B4J280 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV40A0A0B4J280 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV40A0A0B4J280 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRAV40A0A0B4J280 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.85■□□□□ 0.77
TRAV40A0A0B4J280 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
TRAV40A0A0B4J280 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRAV40A0A0B4J280 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRAV40A0A0B4J280 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC19.85■□□□□ 0.77
TRAV40A0A0B4J280 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC19.85■□□□□ 0.77
TRAV40A0A0B4J280 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV40A0A0B4J280 SHF-206ENST00000560471 2499 ntTSL 5 BASIC19.84■□□□□ 0.77
TRAV40A0A0B4J280 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV40A0A0B4J280 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC19.84■□□□□ 0.77
TRAV40A0A0B4J280 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
TRAV40A0A0B4J280 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV40A0A0B4J280 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV40A0A0B4J280 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRAV40A0A0B4J280 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
TRAV40A0A0B4J280 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAV40A0A0B4J280 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAV40A0A0B4J280 AC074183.2-201ENST00000623112 922 ntBASIC19.83■□□□□ 0.77
TRAV40A0A0B4J280 KRT8P33-201ENST00000508125 1423 ntBASIC19.83■□□□□ 0.76
TRAV40A0A0B4J280 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
TRAV40A0A0B4J280 AC142086.6-201ENST00000621154 1765 ntBASIC19.83■□□□□ 0.76
TRAV40A0A0B4J280 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
TRAV40A0A0B4J280 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.82■□□□□ 0.76
TRAV40A0A0B4J280 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.82■□□□□ 0.76
TRAV40A0A0B4J280 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.82■□□□□ 0.76
TRAV40A0A0B4J280 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV40A0A0B4J280 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV40A0A0B4J280 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV40A0A0B4J280 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV40A0A0B4J280 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.81■□□□□ 0.76
TRAV40A0A0B4J280 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.81■□□□□ 0.76
TRAV40A0A0B4J280 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.81■□□□□ 0.76
TRAV40A0A0B4J280 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC19.81■□□□□ 0.76
TRAV40A0A0B4J280 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC19.81■□□□□ 0.76
TRAV40A0A0B4J280 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV40A0A0B4J280 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV40A0A0B4J280 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC19.8■□□□□ 0.76
TRAV40A0A0B4J280 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 AC142472.1-201ENST00000612013 1741 ntBASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV40A0A0B4J280 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC19.78■□□□□ 0.76
TRAV40A0A0B4J280 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV40A0A0B4J280 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV40A0A0B4J280 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.78■□□□□ 0.76
TRAV40A0A0B4J280 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV40A0A0B4J280 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAV40A0A0B4J280 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAV40A0A0B4J280 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TRAV40A0A0B4J280 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAV40A0A0B4J280 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC19.77■□□□□ 0.76
TRAV40A0A0B4J280 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
TRAV40A0A0B4J280 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC19.76■□□□□ 0.75
TRAV40A0A0B4J280 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV40A0A0B4J280 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
TRAV40A0A0B4J280 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV40A0A0B4J280 YBX1P4-201ENST00000392794 808 ntBASIC19.76■□□□□ 0.75
TRAV40A0A0B4J280 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms