Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV40A0A0B4J280 AC139795.1-202ENST00000500444 432 ntBASIC19.92■□□□□ 0.78
TRAV40A0A0B4J280 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV40A0A0B4J280 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
TRAV40A0A0B4J280 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
TRAV40A0A0B4J280 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC19.91■□□□□ 0.78
TRAV40A0A0B4J280 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
TRAV40A0A0B4J280 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.91■□□□□ 0.78
TRAV40A0A0B4J280 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV40A0A0B4J280 BX255925.1-201ENST00000566954 1854 ntBASIC19.9■□□□□ 0.78
TRAV40A0A0B4J280 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
TRAV40A0A0B4J280 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV40A0A0B4J280 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC19.9■□□□□ 0.78
TRAV40A0A0B4J280 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC19.9■□□□□ 0.78
TRAV40A0A0B4J280 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC19.9■□□□□ 0.78
TRAV40A0A0B4J280 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV40A0A0B4J280 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
TRAV40A0A0B4J280 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV40A0A0B4J280 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV40A0A0B4J280 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
TRAV40A0A0B4J280 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRAV40A0A0B4J280 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.88■□□□□ 0.77
TRAV40A0A0B4J280 AC010980.1-201ENST00000587192 1142 ntBASIC19.88■□□□□ 0.77
TRAV40A0A0B4J280 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC19.88■□□□□ 0.77
TRAV40A0A0B4J280 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRAV40A0A0B4J280 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRAV40A0A0B4J280 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRAV40A0A0B4J280 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TRAV40A0A0B4J280 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV40A0A0B4J280 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV40A0A0B4J280 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV40A0A0B4J280 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.86■□□□□ 0.77
TRAV40A0A0B4J280 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV40A0A0B4J280 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRAV40A0A0B4J280 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRAV40A0A0B4J280 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC19.85■□□□□ 0.77
TRAV40A0A0B4J280 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
TRAV40A0A0B4J280 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRAV40A0A0B4J280 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRAV40A0A0B4J280 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC19.85■□□□□ 0.77
TRAV40A0A0B4J280 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC19.85■□□□□ 0.77
TRAV40A0A0B4J280 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV40A0A0B4J280 SHF-206ENST00000560471 2499 ntTSL 5 BASIC19.84■□□□□ 0.77
TRAV40A0A0B4J280 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV40A0A0B4J280 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC19.84■□□□□ 0.77
TRAV40A0A0B4J280 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
TRAV40A0A0B4J280 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV40A0A0B4J280 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV40A0A0B4J280 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRAV40A0A0B4J280 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
TRAV40A0A0B4J280 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAV40A0A0B4J280 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAV40A0A0B4J280 AC074183.2-201ENST00000623112 922 ntBASIC19.83■□□□□ 0.77
TRAV40A0A0B4J280 KRT8P33-201ENST00000508125 1423 ntBASIC19.83■□□□□ 0.76
TRAV40A0A0B4J280 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
TRAV40A0A0B4J280 AC142086.6-201ENST00000621154 1765 ntBASIC19.83■□□□□ 0.76
TRAV40A0A0B4J280 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
TRAV40A0A0B4J280 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.82■□□□□ 0.76
TRAV40A0A0B4J280 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.82■□□□□ 0.76
TRAV40A0A0B4J280 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.82■□□□□ 0.76
TRAV40A0A0B4J280 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV40A0A0B4J280 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV40A0A0B4J280 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV40A0A0B4J280 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV40A0A0B4J280 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.81■□□□□ 0.76
TRAV40A0A0B4J280 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.81■□□□□ 0.76
TRAV40A0A0B4J280 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.81■□□□□ 0.76
TRAV40A0A0B4J280 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC19.81■□□□□ 0.76
TRAV40A0A0B4J280 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC19.81■□□□□ 0.76
TRAV40A0A0B4J280 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV40A0A0B4J280 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV40A0A0B4J280 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC19.8■□□□□ 0.76
TRAV40A0A0B4J280 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 AC142472.1-201ENST00000612013 1741 ntBASIC19.79■□□□□ 0.76
TRAV40A0A0B4J280 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV40A0A0B4J280 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC19.78■□□□□ 0.76
TRAV40A0A0B4J280 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV40A0A0B4J280 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV40A0A0B4J280 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.78■□□□□ 0.76
TRAV40A0A0B4J280 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV40A0A0B4J280 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAV40A0A0B4J280 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAV40A0A0B4J280 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TRAV40A0A0B4J280 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAV40A0A0B4J280 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC19.77■□□□□ 0.76
TRAV40A0A0B4J280 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
TRAV40A0A0B4J280 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC19.76■□□□□ 0.75
TRAV40A0A0B4J280 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV40A0A0B4J280 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
TRAV40A0A0B4J280 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV40A0A0B4J280 YBX1P4-201ENST00000392794 808 ntBASIC19.76■□□□□ 0.75
TRAV40A0A0B4J280 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms