Protein–RNA interactions for Protein: Q07955

SRSF1, Serine/arginine-rich splicing factor 1, humanhuman

Known RBP eCLIP

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF1Q07955 MKL1-208ENST00000466278 577 ntTSL 321.54■■□□□ 1.046e-7■□□□□ 9
SRSF1Q07955 TXNL4A-202ENST00000355491 803 ntTSL 1 (best)21.23■□□□□ 0.996e-7■□□□□ 9
SRSF1Q07955 AVL9-207ENST00000485228 489 ntTSL 520.21■□□□□ 0.836e-7■□□□□ 9
SRSF1Q07955 TXNL4A-204ENST00000585769 988 ntTSL 219.86■□□□□ 0.776e-7■□□□□ 9
SRSF1Q07955 QPCTL-203ENST00000591606 561 ntTSL 319.72■□□□□ 0.756e-7■□□□□ 9
SRSF1Q07955 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.28■□□□□ 0.686e-7■□□□□ 9
SRSF1Q07955 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.396e-7■□□□□ 9
SRSF1Q07955 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.11■□□□□ 0.336e-7■□□□□ 9
SRSF1Q07955 LUC7L-218ENST00000494366 668 ntTSL 317.06■□□□□ 0.326e-8■□□□□ 9
SRSF1Q07955 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC16.86■□□□□ 0.296e-7■□□□□ 9
SRSF1Q07955 PSMD6-205ENST00000475036 1045 ntTSL 316.16■□□□□ 0.186e-7■□□□□ 9
SRSF1Q07955 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC15.31■□□□□ 0.046e-7■□□□□ 9
SRSF1Q07955 PSMD6-212ENST00000497323 717 ntTSL 514.98□□□□□ -0.016e-7■□□□□ 9
SRSF1Q07955 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC14.8□□□□□ -0.046e-7■□□□□ 9
SRSF1Q07955 MKL1-207ENST00000463769 531 ntTSL 1 (best)14.38□□□□□ -0.116e-7■□□□□ 9
SRSF1Q07955 PRMT7-211ENST00000563608 626 ntTSL 514.35□□□□□ -0.116e-7■□□□□ 9
SRSF1Q07955 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.256e-7■□□□□ 9
SRSF1Q07955 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.266e-7■□□□□ 9
SRSF1Q07955 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.346e-7■□□□□ 9
SRSF1Q07955 PSMD6-206ENST00000476464 2052 ntTSL 212.82□□□□□ -0.366e-7■□□□□ 9
SRSF1Q07955 AVL9-204ENST00000459629 7937 ntTSL 212.71□□□□□ -0.386e-7■□□□□ 9
SRSF1Q07955 STK36-205ENST00000422778 586 ntTSL 512.37□□□□□ -0.436e-7■□□□□ 9
SRSF1Q07955 PPP1R12C-204ENST00000586992 4141 nt12.06□□□□□ -0.486e-7■□□□□ 9
SRSF1Q07955 PSMD6-209ENST00000482510 1176 ntTSL 5 BASIC11.39□□□□□ -0.596e-7■□□□□ 9
SRSF1Q07955 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC11.31□□□□□ -0.66e-7■□□□□ 9
SRSF1Q07955 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC10.91□□□□□ -0.666e-7■□□□□ 9
SRSF1Q07955 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC10.85□□□□□ -0.676e-7■□□□□ 9
SRSF1Q07955 PSMD6-207ENST00000478185 469 ntTSL 510.62□□□□□ -0.716e-7■□□□□ 9
SRSF1Q07955 TOP3A-216ENST00000583804 1465 ntTSL 59.63□□□□□ -0.876e-7■□□□□ 9
SRSF1Q07955 LUC7L-216ENST00000469109 950 ntTSL 1 (best)9.62□□□□□ -0.876e-8■□□□□ 9
SRSF1Q07955 AVL9-202ENST00000409301 4336 ntTSL 5 BASIC9.04□□□□□ -0.966e-7■□□□□ 9
SRSF1Q07955 LUC7L-208ENST00000428363 498 ntTSL 58.9□□□□□ -0.986e-8■□□□□ 9
SRSF1Q07955 STK36-214ENST00000480709 652 ntTSL 46.75□□□□□ -1.336e-7■□□□□ 9
SRSF1Q07955 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.65□□□□□ -1.516e-7■□□□□ 9
SRSF1Q07955 RNU6-9-201ENST00000384776 107 ntBASIC3.05□□□□□ -1.924e-10■□□□□ 9
SRSF1Q07955 LARP1-208ENST00000518892 399 ntTSL 319.79■□□□□ 0.768e-9■□□□□ 9
SRSF1Q07955 RNPEP-212ENST00000492587 780 ntTSL 519.89■□□□□ 0.773e-7■□□□□ 8.9
SRSF1Q07955 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC17.41■□□□□ 0.383e-7■□□□□ 8.9
SRSF1Q07955 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.243e-7■□□□□ 8.9
SRSF1Q07955 RNPEP-209ENST00000479726 822 ntTSL 516.03■□□□□ 0.163e-7■□□□□ 8.9
SRSF1Q07955 RNPEP-203ENST00000447312 1166 ntTSL 511.94□□□□□ -0.53e-7■□□□□ 8.9
SRSF1Q07955 RNPEP-210ENST00000481780 847 ntTSL 511.41□□□□□ -0.583e-7■□□□□ 8.9
SRSF1Q07955 RNPEP-206ENST00000471105 2093 ntTSL 1 (best)10.99□□□□□ -0.653e-7■□□□□ 8.9
SRSF1Q07955 RNPEP-207ENST00000478617 1069 ntTSL 510.24□□□□□ -0.773e-7■□□□□ 8.9
SRSF1Q07955 RNPEP-213ENST00000492849 958 ntTSL 59.38□□□□□ -0.913e-7■□□□□ 8.9
SRSF1Q07955 RNPEP-211ENST00000487116 851 ntTSL 39.11□□□□□ -0.953e-7■□□□□ 8.9
SRSF1Q07955 RNPEP-214ENST00000620670 683 ntTSL 37.34□□□□□ -1.233e-7■□□□□ 8.9
SRSF1Q07955 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC13.24□□□□□ -0.299e-7■□□□□ 8.9
SRSF1Q07955 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.79e-7■□□□□ 8.9
SRSF1Q07955 CTNNB1-201ENST00000349496 3737 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.779e-7■□□□□ 8.9
SRSF1Q07955 CTNNB1-203ENST00000396185 3356 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.919e-7■□□□□ 8.9
SRSF1Q07955 CTNNB1-204ENST00000405570 2513 ntAPPRIS P1 TSL 2 BASIC7.86□□□□□ -1.159e-7■□□□□ 8.9
SRSF1Q07955 USP7-221ENST00000570256 591 ntTSL 37.5□□□□□ -1.213e-7■□□□□ 8.9
SRSF1Q07955 USP7-217ENST00000567329 567 ntTSL 45.78□□□□□ -1.483e-7■□□□□ 8.9
SRSF1Q07955 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.12■□□□□ 0.332e-11■□□□□ 8.9
SRSF1Q07955 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.181e-6■□□□□ 8.9
SRSF1Q07955 ANKRD12-204ENST00000540578 1338 ntTSL 1 (best)11.86□□□□□ -0.511e-6■□□□□ 8.9
SRSF1Q07955 PRC1-206ENST00000555455 830 ntTSL 311.49□□□□□ -0.571e-8■□□□□ 8.9
SRSF1Q07955 PRC1-217ENST00000560423 755 ntTSL 36.27□□□□□ -1.411e-8■□□□□ 8.9
SRSF1Q07955 PRC1-210ENST00000556972 728 ntTSL 55.98□□□□□ -1.451e-8■□□□□ 8.9
SRSF1Q07955 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.521e-6■□□□□ 8.9
SRSF1Q07955 SPCS3-202ENST00000507001 478 ntTSL 24.99□□□□□ -1.611e-8■□□□□ 8.9
SRSF1Q07955 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.611e-6■□□□□ 8.9
SRSF1Q07955 USP9X-203ENST00000462850 548 ntTSL 44.66□□□□□ -1.661e-6■□□□□ 8.9
SRSF1Q07955 ANKRD12-205ENST00000546007 978 ntTSL 53.7□□□□□ -1.821e-6■□□□□ 8.9
SRSF1Q07955 ANKRD12-202ENST00000359158 2250 ntTSL 22.23□□□□□ -2.051e-6■□□□□ 8.9
SRSF1Q07955 DANCR-203ENST00000441504 336 ntTSL 216.67■□□□□ 0.262e-12■□□□□ 8.9
SRSF1Q07955 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.05■□□□□ 0.162e-12■□□□□ 8.9
SRSF1Q07955 HMG20B-215ENST00000585741 363 ntTSL 315.52■□□□□ 0.081e-7■□□□□ 8.9
SRSF1Q07955 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.02■□□□□ -02e-12■□□□□ 8.9
SRSF1Q07955 DANCR-202ENST00000425653 823 ntTSL 1 (best)15.02■□□□□ -02e-12■□□□□ 8.9
SRSF1Q07955 SOGA1-203ENST00000463491 802 ntTSL 213.73□□□□□ -0.211e-7■□□□□ 8.9
SRSF1Q07955 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.671e-7■□□□□ 8.9
SRSF1Q07955 SOGA1-202ENST00000279034 3703 ntAPPRIS P3 TSL 5 BASIC8.53□□□□□ -1.041e-7■□□□□ 8.9
SRSF1Q07955 UBR4-201ENST00000375218 4031 ntTSL 2 BASIC8.27□□□□□ -1.081e-7■□□□□ 8.9
SRSF1Q07955 MED13L-203ENST00000548743 568 ntTSL 37.34□□□□□ -1.231e-7■□□□□ 8.9
SRSF1Q07955 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC4.79□□□□□ -1.641e-6■□□□□ 8.9
SRSF1Q07955 DDX39A-204ENST00000586558 1127 ntTSL 217.14■□□□□ 0.336e-8■□□□□ 8.9
SRSF1Q07955 DDX39A-218ENST00000592632 586 ntTSL 212□□□□□ -0.496e-8■□□□□ 8.9
SRSF1Q07955 DDX39A-220ENST00000593008 538 ntTSL 38.84□□□□□ -0.996e-8■□□□□ 8.9
SRSF1Q07955 PPP2CA-201ENST00000231504 564 ntTSL 425.55■■□□□ 1.689e-7■□□□□ 8.9
SRSF1Q07955 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.669e-7■□□□□ 8.9
SRSF1Q07955 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.379e-7■□□□□ 8.9
SRSF1Q07955 MPHOSPH9-218ENST00000545974 1739 ntTSL 48.84□□□□□ -0.995e-6■□□□□ 8.9
SRSF1Q07955 AC104109.4-201ENST00000520515 1744 ntTSL 26.76□□□□□ -1.339e-7■□□□□ 8.9
SRSF1Q07955 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC6.08□□□□□ -1.449e-7■□□□□ 8.9
SRSF1Q07955 MPHOSPH9-223ENST00000606704 553 ntTSL 55.6□□□□□ -1.515e-6■□□□□ 8.9
SRSF1Q07955 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.18□□□□□ -1.585e-6■□□□□ 8.9
SRSF1Q07955 MPHOSPH9-213ENST00000541603 856 ntAPPRIS ALT2 TSL 1 (best)4.81□□□□□ -1.645e-6■□□□□ 8.9
SRSF1Q07955 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.765e-6■□□□□ 8.9
SRSF1Q07955 MPHOSPH9-201ENST00000302373 3097 ntTSL 1 (best)3.26□□□□□ -1.895e-6■□□□□ 8.9
SRSF1Q07955 MPHOSPH9-217ENST00000545556 3634 ntTSL 53.07□□□□□ -1.925e-6■□□□□ 8.9
SRSF1Q07955 ASPSCR1-220ENST00000585140 447 ntTSL 318.26■□□□□ 0.514e-16■□□□□ 8.9
SRSF1Q07955 ASPSCR1-214ENST00000582404 534 ntTSL 317.41■□□□□ 0.384e-16■□□□□ 8.9
SRSF1Q07955 ASPSCR1-221ENST00000585274 984 ntTSL 517.01■□□□□ 0.314e-16■□□□□ 8.9
SRSF1Q07955 ASPSCR1-206ENST00000578361 590 ntTSL 214.88□□□□□ -0.034e-16■□□□□ 8.9
SRSF1Q07955 ASPSCR1-218ENST00000583744 539 ntTSL 414.83□□□□□ -0.044e-16■□□□□ 8.9
SRSF1Q07955 ASPSCR1-215ENST00000583142 532 ntTSL 311.79□□□□□ -0.524e-16■□□□□ 8.9
SRSF1Q07955 ASPSCR1-217ENST00000583693 3976 ntTSL 29.95□□□□□ -0.824e-16■□□□□ 8.9
SRSF1Q07955 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.421e-6■□□□□ 8.9
Retrieved 100 of 14,836 protein–RNA pairs in 279.6 ms