Protein–RNA interactions for Protein: Q9Y221

NIP7, 60S ribosome subunit biogenesis protein NIP7 homolog, humanhuman

Known RBP eCLIP

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7Q9Y221 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.624e-13■□□□□ 10.1
NIP7Q9Y221 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.614e-13■□□□□ 10.1
NIP7Q9Y221 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.571e-6■□□□□ 10.1
NIP7Q9Y221 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC18.59■□□□□ 0.571e-6■□□□□ 10.1
NIP7Q9Y221 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.541e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-244ENST00000435080 1710 ntTSL 518.23■□□□□ 0.511e-6■□□□□ 10.1
NIP7Q9Y221 PTPRS-206ENST00000588552 5443 ntTSL 1 (best)18.16■□□□□ 0.51e-6■□□□□ 10.1
NIP7Q9Y221 PEG3-209ENST00000599577 5052 ntAPPRIS P1 TSL 1 (best)17.78■□□□□ 0.441e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-245ENST00000437771 2407 ntTSL 517.77■□□□□ 0.441e-6■□□□□ 10.1
NIP7Q9Y221 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.424e-13■□□□□ 10.1
NIP7Q9Y221 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.352e-10■□□□□ 10.1
NIP7Q9Y221 BAG6-254ENST00000456286 807 ntTSL 1 (best)17.15■□□□□ 0.341e-6■□□□□ 10.1
NIP7Q9Y221 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.254e-13■□□□□ 10.1
NIP7Q9Y221 NDRG1-216ENST00000521026 2145 ntTSL 216.43■□□□□ 0.221e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-253ENST00000454165 544 ntTSL 316.25■□□□□ 0.191e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-255ENST00000456622 859 ntTSL 516.03■□□□□ 0.161e-6■□□□□ 10.1
NIP7Q9Y221 NDRG1-217ENST00000521414 2349 ntTSL 215.91■□□□□ 0.141e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-239ENST00000424176 747 ntTSL 315.84■□□□□ 0.131e-6■□□□□ 10.1
NIP7Q9Y221 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.121e-6■□□□□ 10.1
NIP7Q9Y221 PEG3-207ENST00000599534 5115 ntAPPRIS P1 TSL 1 (best)15.43■□□□□ 0.061e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-242ENST00000433828 902 ntTSL 215.1■□□□□ 0.011e-6■□□□□ 10.1
NIP7Q9Y221 ZIM2-203ENST00000595671 2054 ntTSL 1 (best)14.89□□□□□ -0.031e-6■□□□□ 10.1
NIP7Q9Y221 SERPINA3-208ENST00000556968 1289 ntTSL 1 (best)14.54□□□□□ -0.082e-10■□□□□ 10.1
NIP7Q9Y221 BAG6-241ENST00000428326 1051 ntTSL 514.49□□□□□ -0.091e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-237ENST00000375976 3644 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.121e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-247ENST00000439687 3104 ntTSL 2 BASIC14.25□□□□□ -0.131e-6■□□□□ 10.1
NIP7Q9Y221 PEG3-202ENST00000593695 4741 ntTSL 1 (best) BASIC13.96□□□□□ -0.171e-6■□□□□ 10.1
NIP7Q9Y221 PTPRS-201ENST00000262963 4766 ntTSL 5 BASIC13.9□□□□□ -0.181e-6■□□□□ 10.1
NIP7Q9Y221 PTPRS-210ENST00000592099 4766 ntTSL 1 (best) BASIC13.9□□□□□ -0.181e-6■□□□□ 10.1
NIP7Q9Y221 AC068580.4-203ENST00000636397 4038 ntAPPRIS P5 TSL 5 BASIC13.81□□□□□ -0.24e-13■□□□□ 10.1
NIP7Q9Y221 RPL29-201ENST00000294189 723 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.22e-10■□□□□ 10.1
NIP7Q9Y221 PTPRS-202ENST00000353284 4518 ntTSL 5 BASIC13.52□□□□□ -0.251e-6■□□□□ 10.1
NIP7Q9Y221 SERPINA3-202ENST00000393080 1581 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.262e-10■□□□□ 10.1
NIP7Q9Y221 BAG6-235ENST00000362049 3626 ntTSL 2 BASIC13.33□□□□□ -0.281e-6■□□□□ 10.1
NIP7Q9Y221 SERPINA3-201ENST00000393078 1589 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.322e-10■□□□□ 10.1
NIP7Q9Y221 SERPINA3-204ENST00000482740 2420 ntTSL 1 (best) BASIC12.67□□□□□ -0.382e-10■□□□□ 10.1
NIP7Q9Y221 NDRG1-218ENST00000521438 2810 ntTSL 212.41□□□□□ -0.421e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-234ENST00000211379 3779 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.431e-6■□□□□ 10.1
NIP7Q9Y221 BAG6-236ENST00000375964 3815 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.461e-6■□□□□ 10.1
NIP7Q9Y221 ZIM2-205ENST00000597281 2037 ntTSL 1 (best)11.84□□□□□ -0.511e-6■□□□□ 10.1
NIP7Q9Y221 RPL29-205ENST00000480306 719 ntTSL 211.77□□□□□ -0.532e-10■□□□□ 10.1
NIP7Q9Y221 PEG3-201ENST00000326441 8723 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.751e-6■□□□□ 10.1
NIP7Q9Y221 ZIM2-207ENST00000601070 1965 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.811e-6■□□□□ 10.1
NIP7Q9Y221 LRP1-206ENST00000554118 418 ntTSL 29.77□□□□□ -0.855e-9■□□□□ 10.1
NIP7Q9Y221 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.532e-10■□□□□ 10.1
NIP7Q9Y221 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.639e-11■□□□□ 10.1
NIP7Q9Y221 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC7.28□□□□□ -1.241e-323■□□□□ 10
NIP7Q9Y221 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.44e-11■□□□□ 10
NIP7Q9Y221 C3-207ENST00000596238 563 ntTSL 210.43□□□□□ -0.747e-29■□□□□ 10
NIP7Q9Y221 SNORD13-201ENST00000459299 104 ntBASIC2.36□□□□□ -2.031e-40■□□□□ 10
NIP7Q9Y221 FN1-219ENST00000474036 1058 ntTSL 26.57□□□□□ -1.361e-41■□□□□ 10
NIP7Q9Y221 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC21.71■■□□□ 1.072e-6■□□□□ 10
NIP7Q9Y221 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.242e-6■□□□□ 10
NIP7Q9Y221 PSAP-201ENST00000394934 2830 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.042e-6■□□□□ 10
NIP7Q9Y221 PSAP-206ENST00000633965 500 ntTSL 59.34□□□□□ -0.912e-6■□□□□ 10
NIP7Q9Y221 NCL-202ENST00000356936 890 ntTSL 322.37■■□□□ 1.171e-323■□□□□ 10
NIP7Q9Y221 NCL-208ENST00000466274 671 ntTSL 27.92□□□□□ -1.141e-323■□□□□ 10
NIP7Q9Y221 SNORD20-201ENST00000384550 80 ntBASIC-0.62□□□□□ -2.511e-323■□□□□ 10
NIP7Q9Y221 A2M-211ENST00000543436 600 ntTSL 514.92□□□□□ -0.022e-18■□□□□ 10
NIP7Q9Y221 LGALS3BP-207ENST00000587311 1905 ntTSL 221.1■□□□□ 0.972e-15■□□□□ 9.9
NIP7Q9Y221 LGALS3BP-204ENST00000586720 1736 ntTSL 520.24■□□□□ 0.832e-15■□□□□ 9.9
NIP7Q9Y221 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC20.03■□□□□ 0.82e-15■□□□□ 9.9
NIP7Q9Y221 LGALS3BP-205ENST00000587251 2091 ntTSL 519.56■□□□□ 0.722e-15■□□□□ 9.9
NIP7Q9Y221 LGALS3BP-201ENST00000262776 2405 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.112e-15■□□□□ 9.9
NIP7Q9Y221 C3-215ENST00000601008 303 ntTSL 55.65□□□□□ -1.51e-20■□□□□ 9.9
NIP7Q9Y221 APOH-203ENST00000581797 748 ntTSL 38.78□□□□□ -14e-8■□□□□ 9.9
NIP7Q9Y221 APOH-202ENST00000577982 707 ntTSL 55.81□□□□□ -1.484e-8■□□□□ 9.9
NIP7Q9Y221 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.894e-8■□□□□ 9.9
NIP7Q9Y221 RPL13A-211ENST00000486930 652 ntTSL 320.48■□□□□ 0.871e-323■□□□□ 9.9
NIP7Q9Y221 SNORD32A-201ENST00000364805 84 ntBASIC2.04□□□□□ -2.081e-323■□□□□ 9.9
NIP7Q9Y221 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.022e-16■□□□□ 9.9
NIP7Q9Y221 A2M-212ENST00000545828 471 ntTSL 46.08□□□□□ -1.442e-16■□□□□ 9.9
NIP7Q9Y221 BSG-208ENST00000573784 559 ntTSL 425.07■■□□□ 1.63e-19■□□□□ 9.9
NIP7Q9Y221 BSG-211ENST00000576984 544 ntTSL 423.8■■□□□ 1.43e-19■□□□□ 9.9
NIP7Q9Y221 BSG-207ENST00000573216 545 ntTSL 422.76■■□□□ 1.233e-19■□□□□ 9.9
NIP7Q9Y221 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.073e-19■□□□□ 9.9
NIP7Q9Y221 BSG-214ENST00000614867 960 ntTSL 3 BASIC21.54■■□□□ 1.043e-19■□□□□ 9.9
NIP7Q9Y221 BSG-215ENST00000618006 1329 ntTSL 2 BASIC21.39■■□□□ 1.013e-19■□□□□ 9.9
NIP7Q9Y221 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC21.02■□□□□ 0.963e-19■□□□□ 9.9
NIP7Q9Y221 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC21.02■□□□□ 0.963e-19■□□□□ 9.9
NIP7Q9Y221 BSG-213ENST00000613627 689 ntTSL 320.16■□□□□ 0.823e-19■□□□□ 9.9
NIP7Q9Y221 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC19.97■□□□□ 0.793e-19■□□□□ 9.9
NIP7Q9Y221 BSG-206ENST00000572899 582 ntTSL 219.94■□□□□ 0.783e-19■□□□□ 9.9
NIP7Q9Y221 BSG-205ENST00000571735 2155 ntTSL 219.09■□□□□ 0.653e-19■□□□□ 9.9
NIP7Q9Y221 NDRG1-212ENST00000519278 3983 ntTSL 210.53□□□□□ -0.726e-7■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-206ENST00000587310 768 ntTSL 221.54■■□□□ 1.044e-15■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-215ENST00000589775 893 ntTSL 320.36■□□□□ 0.854e-15■□□□□ 9.8
NIP7Q9Y221 C3-214ENST00000600763 406 ntTSL 320.03■□□□□ 0.82e-43■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-210ENST00000588508 882 ntTSL 219.38■□□□□ 0.694e-15■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC19.25■□□□□ 0.674e-15■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-214ENST00000589527 818 ntTSL 318.37■□□□□ 0.534e-15■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-211ENST00000588587 1020 ntTSL 517.8■□□□□ 0.444e-15■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-208ENST00000588198 1132 ntTSL 217.62■□□□□ 0.414e-15■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-216ENST00000589906 540 ntTSL 317.41■□□□□ 0.384e-15■□□□□ 9.8
NIP7Q9Y221 LGALS3BP-219ENST00000592255 556 ntTSL 216.29■□□□□ 0.24e-15■□□□□ 9.8
NIP7Q9Y221 C3-212ENST00000599899 1992 ntTSL 29.5□□□□□ -0.892e-20■□□□□ 9.8
NIP7Q9Y221 SERPINA1-215ENST00000556955 571 ntTSL 417.98■□□□□ 0.472e-66■□□□□ 9.8
NIP7Q9Y221 SERPINA1-214ENST00000556091 643 ntTSL 316.54■□□□□ 0.242e-66■□□□□ 9.8
NIP7Q9Y221 SERPINA1-219ENST00000557492 951 ntTSL 415.77■□□□□ 0.122e-66■□□□□ 9.8
NIP7Q9Y221 SERPINA1-212ENST00000554720 446 ntTSL 59.3□□□□□ -0.922e-66■□□□□ 9.8
Retrieved 100 of 1,619 protein–RNA pairs in 90 ms