RNA–Protein interactions for RNA: ENST00000236671.6

CTSD-201, Transcript of cathepsin D, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CTSD, Length 2,123 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-201ENST00000236671 NISCHQ9Y2I1 1504 aa32.98■■■□□ 2.87
CTSD-201ENST00000236671 CCDC180Q9P1Z9 1646 aa29.04■■■□□ 2.24
CTSD-201ENST00000236671 ABCC9O60706 1549 aa28.33■■■□□ 2.13
CTSD-201ENST00000236671 DCAF8L2P0C7V8 631 aa27.66■■■□□ 2.02
CTSD-201ENST00000236671 ZCCHC6Q5VYS8 1495 aaKnown RBP27.55■■■□□ 2
CTSD-201ENST00000236671 SHROOM4Q9ULL8 1493 aa27.24■■□□□ 1.95
CTSD-201ENST00000236671 NACADO15069 1562 aa27.2■■□□□ 1.94
CTSD-201ENST00000236671 RB1CC1Q8TDY2 1594 aa27.18■■□□□ 1.94
CTSD-201ENST00000236671 DCAF1Q9Y4B6 1507 aa27.11■■□□□ 1.93
CTSD-201ENST00000236671 MYO15BQ96JP2 1530 aa27.03■■□□□ 1.92
CTSD-201ENST00000236671 UNC13AQ9UPW8 1703 aa26.83■■□□□ 1.88
CTSD-201ENST00000236671 SCRIBQ14160 1630 aa26.8■■□□□ 1.88
CTSD-201ENST00000236671 SUPT5HO00267 1087 aaKnown RBP26.75■■□□□ 1.87
CTSD-201ENST00000236671 PABPN1Q86U42 306 aaKnown RBP eCLIP26.61■■□□□ 1.851e-12■□□□□ 10
CTSD-201ENST00000236671 BICRAQ9NZM4 1560 aa26.5■■□□□ 1.83
CTSD-201ENST00000236671 CHIC1Q5VXU3 224 aa26.17■■□□□ 1.78
CTSD-201ENST00000236671 CECR2Q9BXF3 1484 aa25.82■■□□□ 1.72
CTSD-201ENST00000236671 DNAJC5BQ9UF47 199 aa25.75■■□□□ 1.71
CTSD-201ENST00000236671 EIF4G1Q04637 1599 aaKnown RBP25.73■■□□□ 1.71
CTSD-201ENST00000236671 HRCP23327 699 aa25.61■■□□□ 1.69
CTSD-201ENST00000236671 CC2D2AQ9P2K1 1620 aa25.58■■□□□ 1.68
CTSD-201ENST00000236671 SMARCA4P51532 1647 aa25.55■■□□□ 1.68
CTSD-201ENST00000236671 MROH2BQ7Z745 1585 aa25.54■■□□□ 1.68
CTSD-201ENST00000236671 BAZ1AQ9NRL2 1556 aaPredicted RBP25.49■■□□□ 1.67
CTSD-201ENST00000236671 PCGF6Q9BYE7 350 aa25.43■■□□□ 1.66
CTSD-201ENST00000236671 RSF1Q96T23 1441 aaPredicted RBP25.36■■□□□ 1.65
CTSD-201ENST00000236671 WIZO95785 1651 aa25.35■■□□□ 1.65
CTSD-201ENST00000236671 LOC105371045A0A1W2PR82 267 aa25.33■■□□□ 1.65
CTSD-201ENST00000236671 ATAD2BQ9ULI0 1458 aa25.28■■□□□ 1.64
CTSD-201ENST00000236671 SMARCA2P51531 1590 aa25.17■■□□□ 1.62
CTSD-201ENST00000236671 PEG3Q9GZU2 1588 aa25.17■■□□□ 1.62
CTSD-201ENST00000236671 NCAPD3P42695 1498 aa25.12■■□□□ 1.61
CTSD-201ENST00000236671 BAZ1BQ9UIG0 1483 aaKnown RBP25.1■■□□□ 1.61
CTSD-201ENST00000236671 HMGXB3Q12766 1538 aa25.03■■□□□ 1.6
CTSD-201ENST00000236671 PPARGC1BQ86YN6 1023 aaKnown RBP25■■□□□ 1.59
CTSD-201ENST00000236671 TRIM26Q12899 539 aaPredicted RBP24.97■■□□□ 1.59
CTSD-201ENST00000236671 TRIM41Q8WV44 630 aa24.95■■□□□ 1.58
CTSD-201ENST00000236671 TOP2AP11388 1531 aaKnown RBP24.91■■□□□ 1.58
CTSD-201ENST00000236671 CCDC88BA6NC98 1476 aa24.7■■□□□ 1.55
CTSD-201ENST00000236671 FAM9AQ8IZU1 332 aaPredicted RBP24.7■■□□□ 1.54
CTSD-201ENST00000236671 NESP48681 1621 aa24.68■■□□□ 1.54
CTSD-201ENST00000236671 ZEB1P37275 1124 aaPredicted RBP24.5■■□□□ 1.51
CTSD-201ENST00000236671 CADPSQ9ULU8 1353 aa24.46■■□□□ 1.51
CTSD-201ENST00000236671 EHMT2Q96KQ7 1210 aa24.43■■□□□ 1.5
CTSD-201ENST00000236671 LAMC3Q9Y6N6 1575 aa24.41■■□□□ 1.5
CTSD-201ENST00000236671 CFTRP13569 1480 aa24.4■■□□□ 1.5
CTSD-201ENST00000236671 KIF21AQ7Z4S6 1674 aa24.36■■□□□ 1.49
CTSD-201ENST00000236671 ERCC6Q03468 1493 aa24.28■■□□□ 1.48
CTSD-201ENST00000236671 PRDM2Q13029 1718 aa24.27■■□□□ 1.48
CTSD-201ENST00000236671 FANCD2Q9BXW9 1451 aa24.24■■□□□ 1.47
CTSD-201ENST00000236671 ABCC8Q09428 1581 aa24.22■■□□□ 1.47
CTSD-201ENST00000236671 PDS5BQ9NTI5 1447 aa24.21■■□□□ 1.47
CTSD-201ENST00000236671 CEP164Q9UPV0 1460 aa24.13■■□□□ 1.45
CTSD-201ENST00000236671 THOC2Q8NI27 1593 aaKnown RBP24.08■■□□□ 1.45
CTSD-201ENST00000236671 WRNQ14191 1432 aaPredicted RBP eCLIP24.06■■□□□ 1.44
CTSD-201ENST00000236671 URB2Q14146 1524 aaKnown RBP24.02■■□□□ 1.44
CTSD-201ENST00000236671 SOGA1O94964 1423 aa24.01■■□□□ 1.43
CTSD-201ENST00000236671 MRC2Q9UBG0 1479 aa23.99■■□□□ 1.43
CTSD-201ENST00000236671 CEP162Q5TB80 1403 aa23.99■■□□□ 1.43
CTSD-201ENST00000236671 EEA1Q15075 1411 aa23.96■■□□□ 1.43
CTSD-201ENST00000236671 TNIKQ9UKE5 1360 aa23.95■■□□□ 1.42
CTSD-201ENST00000236671 CUX1P39880 1505 aa23.92■■□□□ 1.42
CTSD-201ENST00000236671 WDR62O43379 1518 aa23.91■■□□□ 1.42
CTSD-201ENST00000236671 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.9■■□□□ 1.42
CTSD-201ENST00000236671 TOPBP1Q92547 1522 aa23.9■■□□□ 1.42
CTSD-201ENST00000236671 RUSC2Q8N2Y8 1516 aa23.89■■□□□ 1.41
CTSD-201ENST00000236671 SYNJ1O43426 1573 aa23.87■■□□□ 1.41
CTSD-201ENST00000236671 CCER1Q8TC90 406 aaPredicted RBP23.85■■□□□ 1.41
CTSD-201ENST00000236671 CSRNP3Q8WYN3 585 aa23.85■■□□□ 1.41
CTSD-201ENST00000236671 DNMBPQ6XZF7 1577 aa23.85■■□□□ 1.41
CTSD-201ENST00000236671 GOLGA3Q08378 1498 aa23.8■■□□□ 1.4
CTSD-201ENST00000236671 FGD5Q6ZNL6 1462 aa23.75■■□□□ 1.39
CTSD-201ENST00000236671 CUX2O14529 1486 aa23.75■■□□□ 1.39
CTSD-201ENST00000236671 POLA1P09884 1462 aaPredicted RBP23.75■■□□□ 1.39
CTSD-201ENST00000236671 TOP2BQ02880 1626 aa23.74■■□□□ 1.39
CTSD-201ENST00000236671 RAD54L2Q9Y4B4 1467 aa23.73■■□□□ 1.39
CTSD-201ENST00000236671 BIVM-ERCC5R4GMW8 1640 aa23.72■■□□□ 1.39
CTSD-201ENST00000236671 UBTFP17480 764 aaKnown RBP23.71■■□□□ 1.39
CTSD-201ENST00000236671 TTBK1Q5TCY1 1321 aaPredicted RBP23.7■■□□□ 1.38
CTSD-201ENST00000236671 KIF21BO75037 1637 aa23.67■■□□□ 1.38
CTSD-201ENST00000236671 SCAF1Q9H7N4 1312 aaKnown RBP23.66■■□□□ 1.38
CTSD-201ENST00000236671 ZNF608Q9ULD9 1512 aaPredicted RBP23.63■■□□□ 1.37
CTSD-201ENST00000236671 TARBP1Q13395 1621 aaKnown RBP23.62■■□□□ 1.37
CTSD-201ENST00000236671 TDRD9Q8NDG6 1382 aaKnown RBP23.55■■□□□ 1.36
CTSD-201ENST00000236671 IFT140Q96RY7 1462 aa23.55■■□□□ 1.36
CTSD-201ENST00000236671 AQRO60306 1485 aaKnown RBP eCLIP23.54■■□□□ 1.361e-6■■■■■ 31.1
CTSD-201ENST00000236671 WDR97A6NE52 1622 aa23.52■■□□□ 1.36
CTSD-201ENST00000236671 CLIP1P30622 1438 aa23.5■■□□□ 1.35
CTSD-201ENST00000236671 EIF4G3O43432 1585 aaKnown RBP23.49■■□□□ 1.35
CTSD-201ENST00000236671 DIEXFQ68CQ4 756 aaKnown RBP23.47■■□□□ 1.35
CTSD-201ENST00000236671 ABCA10Q8WWZ4 1543 aa23.45■■□□□ 1.34
CTSD-201ENST00000236671 VPS8Q8N3P4 1428 aa23.44■■□□□ 1.34
CTSD-201ENST00000236671 RAPGEF2Q9Y4G8 1499 aa23.44■■□□□ 1.34
CTSD-201ENST00000236671 ACIN1Q9UKV3 1341 aaKnown RBP23.4■■□□□ 1.34
CTSD-201ENST00000236671 ABCA5Q8WWZ7 1642 aa23.38■■□□□ 1.33
CTSD-201ENST00000236671 GAPVD1Q14C86 1478 aa23.35■■□□□ 1.33
CTSD-201ENST00000236671 PBRM1Q86U86 1689 aa23.34■■□□□ 1.33
CTSD-201ENST00000236671 NEUROD1Q13562 356 aa23.34■■□□□ 1.33
CTSD-201ENST00000236671 PELP1Q8IZL8 1130 aaKnown RBP23.33■■□□□ 1.33
CTSD-201ENST00000236671 ZNF316A6NFI3 1004 aaPredicted RBP23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms