RNA–Protein interactions for RNA: ENST00000636843.1

CTSD-208, Transcript of cathepsin D, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CTSD, Length 1,512 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-208ENST00000636843 NISCHQ9Y2I1 1504 aa31.41■■■□□ 2.62
CTSD-208ENST00000636843 ABCC9O60706 1549 aa28.2■■■□□ 2.1
CTSD-208ENST00000636843 CCDC180Q9P1Z9 1646 aa28.16■■■□□ 2.1
CTSD-208ENST00000636843 RB1CC1Q8TDY2 1594 aa26.86■■□□□ 1.89
CTSD-208ENST00000636843 NACADO15069 1562 aa26.68■■□□□ 1.86
CTSD-208ENST00000636843 DCAF8L2P0C7V8 631 aa26.55■■□□□ 1.84
CTSD-208ENST00000636843 DNAJC5BQ9UF47 199 aa26.5■■□□□ 1.83
CTSD-208ENST00000636843 MYO15BQ96JP2 1530 aa26.33■■□□□ 1.81
CTSD-208ENST00000636843 PABPN1Q86U42 306 aaKnown RBP eCLIP26.28■■□□□ 1.8
CTSD-208ENST00000636843 UNC13AQ9UPW8 1703 aa26.14■■□□□ 1.78
CTSD-208ENST00000636843 BICRAQ9NZM4 1560 aa26.04■■□□□ 1.76
CTSD-208ENST00000636843 ZCCHC6Q5VYS8 1495 aaKnown RBP26.02■■□□□ 1.76
CTSD-208ENST00000636843 DCAF1Q9Y4B6 1507 aa25.98■■□□□ 1.75
CTSD-208ENST00000636843 SHROOM4Q9ULL8 1493 aa25.76■■□□□ 1.71
CTSD-208ENST00000636843 SCRIBQ14160 1630 aa25.64■■□□□ 1.69
CTSD-208ENST00000636843 CC2D2AQ9P2K1 1620 aa25.47■■□□□ 1.67
CTSD-208ENST00000636843 CECR2Q9BXF3 1484 aa25.43■■□□□ 1.66
CTSD-208ENST00000636843 EIF4G1Q04637 1599 aaKnown RBP25.41■■□□□ 1.66
CTSD-208ENST00000636843 NCAPD3P42695 1498 aa24.65■■□□□ 1.54
CTSD-208ENST00000636843 ATAD2BQ9ULI0 1458 aa24.55■■□□□ 1.52
CTSD-208ENST00000636843 SMARCA2P51531 1590 aa24.49■■□□□ 1.51
CTSD-208ENST00000636843 SMARCA4P51532 1647 aa24.48■■□□□ 1.51
CTSD-208ENST00000636843 HMGXB3Q12766 1538 aa24.44■■□□□ 1.5
CTSD-208ENST00000636843 DNAJC5Q9H3Z4 198 aa24.4■■□□□ 1.5
CTSD-208ENST00000636843 BAZ1AQ9NRL2 1556 aaPredicted RBP24.39■■□□□ 1.49
CTSD-208ENST00000636843 ERCC6Q03468 1493 aa24.38■■□□□ 1.49
CTSD-208ENST00000636843 CUX2O14529 1486 aa24.37■■□□□ 1.49
CTSD-208ENST00000636843 BAZ1BQ9UIG0 1483 aaKnown RBP24.3■■□□□ 1.48
CTSD-208ENST00000636843 PEG3Q9GZU2 1588 aa24.26■■□□□ 1.47
CTSD-208ENST00000636843 NESP48681 1621 aa24.21■■□□□ 1.47
CTSD-208ENST00000636843 MROH2BQ7Z745 1585 aa24.18■■□□□ 1.46
CTSD-208ENST00000636843 LAMC3Q9Y6N6 1575 aa24.07■■□□□ 1.44
CTSD-208ENST00000636843 PDS5BQ9NTI5 1447 aa23.98■■□□□ 1.43
CTSD-208ENST00000636843 THOC2Q8NI27 1593 aaKnown RBP23.95■■□□□ 1.42
CTSD-208ENST00000636843 CADPSQ9ULU8 1353 aa23.91■■□□□ 1.42
CTSD-208ENST00000636843 WIZO95785 1651 aa23.85■■□□□ 1.41
CTSD-208ENST00000636843 KIF21AQ7Z4S6 1674 aa23.85■■□□□ 1.41
CTSD-208ENST00000636843 MRC2Q9UBG0 1479 aa23.73■■□□□ 1.39
CTSD-208ENST00000636843 RSF1Q96T23 1441 aaPredicted RBP23.71■■□□□ 1.39
CTSD-208ENST00000636843 WDR62O43379 1518 aa23.65■■□□□ 1.38
CTSD-208ENST00000636843 CEP164Q9UPV0 1460 aa23.63■■□□□ 1.37
CTSD-208ENST00000636843 CFTRP13569 1480 aa23.61■■□□□ 1.37
CTSD-208ENST00000636843 FANCD2Q9BXW9 1451 aa23.6■■□□□ 1.37
CTSD-208ENST00000636843 TOP2AP11388 1531 aaKnown RBP23.6■■□□□ 1.37
CTSD-208ENST00000636843 URB2Q14146 1524 aaKnown RBP23.39■■□□□ 1.33
CTSD-208ENST00000636843 CCDC88BA6NC98 1476 aa23.34■■□□□ 1.33
CTSD-208ENST00000636843 OSCARQ8IYS5 282 aa23.28■■□□□ 1.32
CTSD-208ENST00000636843 TRIM41Q8WV44 630 aa23.28■■□□□ 1.32
CTSD-208ENST00000636843 PRDM2Q13029 1718 aa23.27■■□□□ 1.32
CTSD-208ENST00000636843 IFT140Q96RY7 1462 aa23.18■■□□□ 1.3
CTSD-208ENST00000636843 TOPBP1Q92547 1522 aa23.14■■□□□ 1.3
CTSD-208ENST00000636843 ABCC8Q09428 1581 aa23.14■■□□□ 1.29
CTSD-208ENST00000636843 ZNF608Q9ULD9 1512 aaPredicted RBP23.1■■□□□ 1.29
CTSD-208ENST00000636843 DNMBPQ6XZF7 1577 aa23.05■■□□□ 1.28
CTSD-208ENST00000636843 EIF4G3O43432 1585 aaKnown RBP22.94■■□□□ 1.26
CTSD-208ENST00000636843 AQRO60306 1485 aaKnown RBP eCLIP22.92■■□□□ 1.261e-6■■■■■ 31.1
CTSD-208ENST00000636843 TARBP1Q13395 1621 aaKnown RBP22.91■■□□□ 1.26
CTSD-208ENST00000636843 POLA1P09884 1462 aaPredicted RBP22.9■■□□□ 1.26
CTSD-208ENST00000636843 RIMBP3CA6NJZ7 1639 aa22.89■■□□□ 1.25
CTSD-208ENST00000636843 RIMBP3BA6NNM3 1639 aa22.89■■□□□ 1.25
CTSD-208ENST00000636843 RIMBP3Q9UFD9 1639 aa22.89■■□□□ 1.25
CTSD-208ENST00000636843 ARHGEF11O15085 1522 aa22.84■■□□□ 1.25
CTSD-208ENST00000636843 SOGA1O94964 1423 aa22.83■■□□□ 1.25
CTSD-208ENST00000636843 RAD54L2Q9Y4B4 1467 aa22.82■■□□□ 1.24
CTSD-208ENST00000636843 FBLN2P98095 1184 aa22.79■■□□□ 1.24
CTSD-208ENST00000636843 TDRD9Q8NDG6 1382 aaKnown RBP22.78■■□□□ 1.24
CTSD-208ENST00000636843 CHD1O14646 1710 aa22.75■■□□□ 1.23
CTSD-208ENST00000636843 FGD5Q6ZNL6 1462 aa22.75■■□□□ 1.23
CTSD-208ENST00000636843 CUX1P39880 1505 aa22.72■■□□□ 1.23
CTSD-208ENST00000636843 WDR97A6NE52 1622 aa22.72■■□□□ 1.23
CTSD-208ENST00000636843 CYB5RLQ6IPT4 315 aa22.71■■□□□ 1.23
CTSD-208ENST00000636843 SNAPC4Q5SXM2 1469 aa22.66■■□□□ 1.22
CTSD-208ENST00000636843 CHMP7Q8WUX9 453 aaPredicted RBP22.64■■□□□ 1.21
CTSD-208ENST00000636843 GRIN2BQ13224 1484 aa22.64■■□□□ 1.21
CTSD-208ENST00000636843 MAGI1Q96QZ7 1491 aaPredicted RBP22.64■■□□□ 1.21
CTSD-208ENST00000636843 SUPT5HO00267 1087 aaKnown RBP22.63■■□□□ 1.21
CTSD-208ENST00000636843 ARAP1Q96P48 1450 aa22.62■■□□□ 1.21
CTSD-208ENST00000636843 SYNJ2O15056 1496 aa22.56■■□□□ 1.2
CTSD-208ENST00000636843 SYNJ1O43426 1573 aa22.55■■□□□ 1.2
CTSD-208ENST00000636843 CLASP1Q7Z460 1538 aa22.55■■□□□ 1.2
CTSD-208ENST00000636843 GAPVD1Q14C86 1478 aa22.54■■□□□ 1.2
CTSD-208ENST00000636843 ABCA10Q8WWZ4 1543 aa22.52■■□□□ 1.2
CTSD-208ENST00000636843 TRHP20396 242 aaPredicted RBP22.47■■□□□ 1.19
CTSD-208ENST00000636843 PBRM1Q86U86 1689 aa22.45■■□□□ 1.18
CTSD-208ENST00000636843 WRNQ14191 1432 aaPredicted RBP eCLIP22.45■■□□□ 1.18
CTSD-208ENST00000636843 ABCA5Q8WWZ7 1642 aa22.43■■□□□ 1.18
CTSD-208ENST00000636843 TOP2BQ02880 1626 aa22.35■■□□□ 1.17
CTSD-208ENST00000636843 BIVM-ERCC5R4GMW8 1640 aa22.33■■□□□ 1.17
CTSD-208ENST00000636843 GRIN2AQ12879 1464 aa22.32■■□□□ 1.16
CTSD-208ENST00000636843 ADAMTS12P58397 1594 aa22.28■■□□□ 1.16
CTSD-208ENST00000636843 FHAD1B1AJZ9 1412 aa22.27■■□□□ 1.16
CTSD-208ENST00000636843 NUP160Q12769 1436 aa22.26■■□□□ 1.15
CTSD-208ENST00000636843 ERICH3Q5RHP9 1530 aa22.24■■□□□ 1.15
CTSD-208ENST00000636843 CEP170Q5SW79 1584 aa22.21■■□□□ 1.15
CTSD-208ENST00000636843 ERCC6L2Q5T890 1561 aa22.17■■□□□ 1.14
CTSD-208ENST00000636843 SHROOM2Q13796 1616 aa22.13■■□□□ 1.13
CTSD-208ENST00000636843 JPH4Q96JJ6 628 aa22.07■■□□□ 1.12
CTSD-208ENST00000636843 PRG4Q92954 1404 aaPredicted RBP22.05■■□□□ 1.12
CTSD-208ENST00000636843 IGF1RP08069 1367 aa21.97■■□□□ 1.11
CTSD-208ENST00000636843 KIF27Q86VH2 1401 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms