Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM3Q53GG5 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM3Q53GG5 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.12■□□□□ 0.81
PDLIM3Q53GG5 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PDLIM3Q53GG5 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.11■□□□□ 0.81
PDLIM3Q53GG5 EI24-212ENST00000615917 1407 ntTSL 2 BASIC20.11■□□□□ 0.81
PDLIM3Q53GG5 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PDLIM3Q53GG5 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PDLIM3Q53GG5 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PDLIM3Q53GG5 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
PDLIM3Q53GG5 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
PDLIM3Q53GG5 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PDLIM3Q53GG5 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PDLIM3Q53GG5 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
PDLIM3Q53GG5 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 AL449106.1-201ENST00000608517 1980 ntBASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 DUX4L13-201ENST00000554103 1267 ntBASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 AL033527.3-201ENST00000566366 1196 ntBASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 DUX4L15-201ENST00000611059 1267 ntBASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 DUX4L23-201ENST00000615195 1269 ntBASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 DUX4L24-201ENST00000617576 1269 ntBASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 DUX4L22-201ENST00000618238 1269 ntBASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 DUX4L20-201ENST00000619712 1269 ntBASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 DUX4L21-201ENST00000622058 1269 ntBASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 DUX4L10-201ENST00000622460 1267 ntBASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 DUX4L25-201ENST00000624915 1269 ntBASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PDLIM3Q53GG5 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PDLIM3Q53GG5 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.09■□□□□ 0.81
PDLIM3Q53GG5 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PDLIM3Q53GG5 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PDLIM3Q53GG5 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC20.09■□□□□ 0.81
PDLIM3Q53GG5 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
PDLIM3Q53GG5 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PDLIM3Q53GG5 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
PDLIM3Q53GG5 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PDLIM3Q53GG5 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
PDLIM3Q53GG5 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PDLIM3Q53GG5 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
PDLIM3Q53GG5 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
PDLIM3Q53GG5 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PDLIM3Q53GG5 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PDLIM3Q53GG5 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.07■□□□□ 0.8
PDLIM3Q53GG5 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.07■□□□□ 0.8
PDLIM3Q53GG5 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
PDLIM3Q53GG5 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.07■□□□□ 0.8
PDLIM3Q53GG5 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.06■□□□□ 0.8
PDLIM3Q53GG5 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PDLIM3Q53GG5 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
PDLIM3Q53GG5 AC008813.1-201ENST00000536597 885 ntBASIC20.06■□□□□ 0.8
PDLIM3Q53GG5 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PDLIM3Q53GG5 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PDLIM3Q53GG5 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
PDLIM3Q53GG5 AC145676.1-201ENST00000514988 2004 ntBASIC20.05■□□□□ 0.8
PDLIM3Q53GG5 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
PDLIM3Q53GG5 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PDLIM3Q53GG5 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PDLIM3Q53GG5 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PDLIM3Q53GG5 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PDLIM3Q53GG5 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.05■□□□□ 0.8
PDLIM3Q53GG5 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PDLIM3Q53GG5 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PDLIM3Q53GG5 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PDLIM3Q53GG5 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
PDLIM3Q53GG5 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.04■□□□□ 0.8
PDLIM3Q53GG5 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.04■□□□□ 0.8
PDLIM3Q53GG5 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
PDLIM3Q53GG5 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
PDLIM3Q53GG5 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC20.03■□□□□ 0.8
PDLIM3Q53GG5 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC20.03■□□□□ 0.8
PDLIM3Q53GG5 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PDLIM3Q53GG5 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC20.03■□□□□ 0.8
PDLIM3Q53GG5 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PDLIM3Q53GG5 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PDLIM3Q53GG5 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PDLIM3Q53GG5 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.02■□□□□ 0.8
PDLIM3Q53GG5 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
PDLIM3Q53GG5 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PDLIM3Q53GG5 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
PDLIM3Q53GG5 AL592295.1-201ENST00000400984 884 ntBASIC20.01■□□□□ 0.79
PDLIM3Q53GG5 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.01■□□□□ 0.79
PDLIM3Q53GG5 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PDLIM3Q53GG5 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PDLIM3Q53GG5 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PDLIM3Q53GG5 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
PDLIM3Q53GG5 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PDLIM3Q53GG5 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PDLIM3Q53GG5 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC19.99■□□□□ 0.79
PDLIM3Q53GG5 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PDLIM3Q53GG5 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PDLIM3Q53GG5 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC19.99■□□□□ 0.79
PDLIM3Q53GG5 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC19.98■□□□□ 0.79
PDLIM3Q53GG5 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
PDLIM3Q53GG5 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.98■□□□□ 0.79
PDLIM3Q53GG5 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.98■□□□□ 0.79
PDLIM3Q53GG5 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms