Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SSX4O60224 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
SSX4O60224 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SSX4O60224 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
SSX4O60224 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
SSX4O60224 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.99■■□□□ 1.11
SSX4O60224 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SSX4O60224 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.99■■□□□ 1.11
SSX4O60224 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SSX4O60224 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SSX4O60224 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.99■■□□□ 1.11
SSX4O60224 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.98■■□□□ 1.11
SSX4O60224 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SSX4O60224 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC21.98■■□□□ 1.11
SSX4O60224 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC21.98■■□□□ 1.11
SSX4O60224 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
SSX4O60224 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SSX4O60224 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
SSX4O60224 LINC00273-201ENST00000539813 1452 ntBASIC21.97■■□□□ 1.11
SSX4O60224 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SSX4O60224 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SSX4O60224 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SSX4O60224 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SSX4O60224 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SSX4O60224 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SSX4O60224 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SSX4O60224 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SSX4O60224 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.97■■□□□ 1.11
SSX4O60224 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SSX4O60224 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC21.97■■□□□ 1.11
SSX4O60224 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SSX4O60224 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SSX4O60224 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
SSX4O60224 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SSX4O60224 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SSX4O60224 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.96■■□□□ 1.11
SSX4O60224 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SSX4O60224 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SSX4O60224 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SSX4O60224 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SSX4O60224 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SSX4O60224 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.95■■□□□ 1.1
SSX4O60224 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC21.95■■□□□ 1.1
SSX4O60224 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SSX4O60224 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.94■■□□□ 1.1
SSX4O60224 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SSX4O60224 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.94■■□□□ 1.1
SSX4O60224 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.94■■□□□ 1.1
SSX4O60224 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
SSX4O60224 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SSX4O60224 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
SSX4O60224 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.93■■□□□ 1.1
SSX4O60224 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC21.93■■□□□ 1.1
SSX4O60224 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
SSX4O60224 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.93■■□□□ 1.1
SSX4O60224 AC133561.1-201ENST00000568600 2415 ntBASIC21.92■■□□□ 1.1
SSX4O60224 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SSX4O60224 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
SSX4O60224 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SSX4O60224 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SSX4O60224 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SSX4O60224 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
SSX4O60224 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SSX4O60224 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SSX4O60224 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
SSX4O60224 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SSX4O60224 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SSX4O60224 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
SSX4O60224 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SSX4O60224 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.9■■□□□ 1.1
SSX4O60224 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.9■■□□□ 1.1
SSX4O60224 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SSX4O60224 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.9■■□□□ 1.1
SSX4O60224 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.9■■□□□ 1.1
SSX4O60224 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.9■■□□□ 1.1
SSX4O60224 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SSX4O60224 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
SSX4O60224 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.89■■□□□ 1.09
SSX4O60224 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SSX4O60224 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
SSX4O60224 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC21.88■■□□□ 1.09
SSX4O60224 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SSX4O60224 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SSX4O60224 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
SSX4O60224 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
SSX4O60224 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
SSX4O60224 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SSX4O60224 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SSX4O60224 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.87■■□□□ 1.09
SSX4O60224 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SSX4O60224 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SSX4O60224 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SSX4O60224 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
SSX4O60224 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.87■■□□□ 1.09
SSX4O60224 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
SSX4O60224 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SSX4O60224 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
SSX4O60224 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC21.86■■□□□ 1.09
SSX4O60224 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
SSX4O60224 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 148.7 ms