Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 DUX4L24-201ENST00000617576 1269 ntBASIC23.84■■□□□ 1.41
UBFD1O14562 DUX4L22-201ENST00000618238 1269 ntBASIC23.84■■□□□ 1.41
UBFD1O14562 DUX4L20-201ENST00000619712 1269 ntBASIC23.84■■□□□ 1.41
UBFD1O14562 DUX4L21-201ENST00000622058 1269 ntBASIC23.84■■□□□ 1.41
UBFD1O14562 DUX4L10-201ENST00000622460 1267 ntBASIC23.84■■□□□ 1.41
UBFD1O14562 DUX4L25-201ENST00000624915 1269 ntBASIC23.84■■□□□ 1.41
UBFD1O14562 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.84■■□□□ 1.41
UBFD1O14562 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
UBFD1O14562 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.83■■□□□ 1.41
UBFD1O14562 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
UBFD1O14562 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
UBFD1O14562 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.82■■□□□ 1.4
UBFD1O14562 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
UBFD1O14562 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC23.82■■□□□ 1.4
UBFD1O14562 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.82■■□□□ 1.4
UBFD1O14562 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
UBFD1O14562 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
UBFD1O14562 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
UBFD1O14562 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
UBFD1O14562 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
UBFD1O14562 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
UBFD1O14562 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
UBFD1O14562 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBFD1O14562 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
UBFD1O14562 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBFD1O14562 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBFD1O14562 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
UBFD1O14562 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
UBFD1O14562 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBFD1O14562 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.8■■□□□ 1.4
UBFD1O14562 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBFD1O14562 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
UBFD1O14562 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
UBFD1O14562 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.8■■□□□ 1.4
UBFD1O14562 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBFD1O14562 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBFD1O14562 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBFD1O14562 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBFD1O14562 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
UBFD1O14562 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
UBFD1O14562 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
UBFD1O14562 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
UBFD1O14562 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
UBFD1O14562 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.79■■□□□ 1.4
UBFD1O14562 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.79■■□□□ 1.4
UBFD1O14562 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
UBFD1O14562 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
UBFD1O14562 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
UBFD1O14562 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.78■■□□□ 1.4
UBFD1O14562 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.78■■□□□ 1.4
UBFD1O14562 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
UBFD1O14562 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
UBFD1O14562 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
UBFD1O14562 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
UBFD1O14562 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
UBFD1O14562 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
UBFD1O14562 DUX4L11-201ENST00000611504 1267 ntBASIC23.77■■□□□ 1.4
UBFD1O14562 DUX4L12-201ENST00000614593 1267 ntBASIC23.77■■□□□ 1.4
UBFD1O14562 DUX4L14-201ENST00000621227 1267 ntBASIC23.77■■□□□ 1.4
UBFD1O14562 AC010501.1-201ENST00000606270 1962 ntBASIC23.77■■□□□ 1.4
UBFD1O14562 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
UBFD1O14562 MIR219A2-201ENST00000608502 1504 ntBASIC23.77■■□□□ 1.4
UBFD1O14562 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
UBFD1O14562 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.76■■□□□ 1.39
UBFD1O14562 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
UBFD1O14562 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
UBFD1O14562 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.76■■□□□ 1.39
UBFD1O14562 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
UBFD1O14562 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
UBFD1O14562 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.75■■□□□ 1.39
UBFD1O14562 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
UBFD1O14562 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.75■■□□□ 1.39
UBFD1O14562 PKM-204ENST00000449901 2526 ntTSL 2 BASIC23.75■■□□□ 1.39
UBFD1O14562 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
UBFD1O14562 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
UBFD1O14562 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
UBFD1O14562 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
UBFD1O14562 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
UBFD1O14562 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
UBFD1O14562 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.74■■□□□ 1.39
UBFD1O14562 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
UBFD1O14562 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
UBFD1O14562 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
UBFD1O14562 AC008813.1-201ENST00000536597 885 ntBASIC23.73■■□□□ 1.39
UBFD1O14562 AC148477.6-201ENST00000623746 465 ntBASIC23.73■■□□□ 1.39
UBFD1O14562 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
UBFD1O14562 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
UBFD1O14562 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
UBFD1O14562 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
UBFD1O14562 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
UBFD1O14562 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
UBFD1O14562 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
UBFD1O14562 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC23.71■■□□□ 1.39
UBFD1O14562 HLA-V-202ENST00000446817 847 ntBASIC23.71■■□□□ 1.39
UBFD1O14562 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
UBFD1O14562 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
UBFD1O14562 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
UBFD1O14562 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
UBFD1O14562 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
UBFD1O14562 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms