Protein–RNA interactions for Protein: Q9H7J1

PPP1R3E, Protein phosphatase 1 regulatory subunit 3E, humanhuman

Predictions only

Length 279 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP1R3EQ9H7J1 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PPP1R3EQ9H7J1 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.84■■□□□ 1.09
PPP1R3EQ9H7J1 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PPP1R3EQ9H7J1 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.83■■□□□ 1.09
PPP1R3EQ9H7J1 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PPP1R3EQ9H7J1 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PPP1R3EQ9H7J1 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PPP1R3EQ9H7J1 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
PPP1R3EQ9H7J1 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PPP1R3EQ9H7J1 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PPP1R3EQ9H7J1 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PPP1R3EQ9H7J1 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PPP1R3EQ9H7J1 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PPP1R3EQ9H7J1 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PPP1R3EQ9H7J1 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PPP1R3EQ9H7J1 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.8■■□□□ 1.08
PPP1R3EQ9H7J1 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
PPP1R3EQ9H7J1 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC21.8■■□□□ 1.08
PPP1R3EQ9H7J1 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC21.8■■□□□ 1.08
PPP1R3EQ9H7J1 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
PPP1R3EQ9H7J1 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.8■■□□□ 1.08
PPP1R3EQ9H7J1 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PPP1R3EQ9H7J1 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PPP1R3EQ9H7J1 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
PPP1R3EQ9H7J1 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PPP1R3EQ9H7J1 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PPP1R3EQ9H7J1 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PPP1R3EQ9H7J1 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
PPP1R3EQ9H7J1 DUX4L29-201ENST00000425409 679 ntBASIC21.79■■□□□ 1.08
PPP1R3EQ9H7J1 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC21.79■■□□□ 1.08
PPP1R3EQ9H7J1 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PPP1R3EQ9H7J1 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PPP1R3EQ9H7J1 AP002414.2-202ENST00000590929 1450 ntBASIC21.78■■□□□ 1.08
PPP1R3EQ9H7J1 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
PPP1R3EQ9H7J1 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PPP1R3EQ9H7J1 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC21.78■■□□□ 1.08
PPP1R3EQ9H7J1 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC21.78■■□□□ 1.08
PPP1R3EQ9H7J1 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PPP1R3EQ9H7J1 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PPP1R3EQ9H7J1 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC21.77■■□□□ 1.08
PPP1R3EQ9H7J1 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.77■■□□□ 1.08
PPP1R3EQ9H7J1 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PPP1R3EQ9H7J1 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.77■■□□□ 1.07
PPP1R3EQ9H7J1 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PPP1R3EQ9H7J1 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
PPP1R3EQ9H7J1 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.76■■□□□ 1.07
PPP1R3EQ9H7J1 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PPP1R3EQ9H7J1 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.76■■□□□ 1.07
PPP1R3EQ9H7J1 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
PPP1R3EQ9H7J1 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PPP1R3EQ9H7J1 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.75■■□□□ 1.07
PPP1R3EQ9H7J1 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PPP1R3EQ9H7J1 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.75■■□□□ 1.07
PPP1R3EQ9H7J1 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PPP1R3EQ9H7J1 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PPP1R3EQ9H7J1 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PPP1R3EQ9H7J1 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PPP1R3EQ9H7J1 HGH1-207ENST00000628266 258 ntTSL 5 BASIC21.74■■□□□ 1.07
PPP1R3EQ9H7J1 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PPP1R3EQ9H7J1 AC092803.2-201ENST00000564287 1899 ntBASIC21.74■■□□□ 1.07
PPP1R3EQ9H7J1 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
PPP1R3EQ9H7J1 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PPP1R3EQ9H7J1 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PPP1R3EQ9H7J1 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PPP1R3EQ9H7J1 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.73■■□□□ 1.07
PPP1R3EQ9H7J1 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PPP1R3EQ9H7J1 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.73■■□□□ 1.07
PPP1R3EQ9H7J1 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PPP1R3EQ9H7J1 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PPP1R3EQ9H7J1 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PPP1R3EQ9H7J1 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
PPP1R3EQ9H7J1 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.72■■□□□ 1.07
PPP1R3EQ9H7J1 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
PPP1R3EQ9H7J1 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
PPP1R3EQ9H7J1 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.71■■□□□ 1.07
PPP1R3EQ9H7J1 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.71■■□□□ 1.07
PPP1R3EQ9H7J1 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.71■■□□□ 1.07
PPP1R3EQ9H7J1 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PPP1R3EQ9H7J1 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
PPP1R3EQ9H7J1 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PPP1R3EQ9H7J1 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.71■■□□□ 1.07
PPP1R3EQ9H7J1 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
PPP1R3EQ9H7J1 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
PPP1R3EQ9H7J1 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
PPP1R3EQ9H7J1 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC21.71■■□□□ 1.07
PPP1R3EQ9H7J1 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.07
PPP1R3EQ9H7J1 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PPP1R3EQ9H7J1 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PPP1R3EQ9H7J1 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PPP1R3EQ9H7J1 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PPP1R3EQ9H7J1 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC21.69■■□□□ 1.06
PPP1R3EQ9H7J1 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PPP1R3EQ9H7J1 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PPP1R3EQ9H7J1 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PPP1R3EQ9H7J1 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
PPP1R3EQ9H7J1 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PPP1R3EQ9H7J1 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PPP1R3EQ9H7J1 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PPP1R3EQ9H7J1 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PPP1R3EQ9H7J1 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms