Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC25.06■■□□□ 1.6
VPS13AQ96RL7 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
VPS13AQ96RL7 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
VPS13AQ96RL7 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
VPS13AQ96RL7 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC25.06■■□□□ 1.6
VPS13AQ96RL7 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
VPS13AQ96RL7 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
VPS13AQ96RL7 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
VPS13AQ96RL7 AL031848.2-201ENST00000607670 837 ntBASIC25.05■■□□□ 1.6
VPS13AQ96RL7 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC25.05■■□□□ 1.6
VPS13AQ96RL7 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
VPS13AQ96RL7 RNF146-205ENST00000477776 762 ntTSL 3 BASIC25.03■■□□□ 1.6
VPS13AQ96RL7 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC25.03■■□□□ 1.6
VPS13AQ96RL7 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
VPS13AQ96RL7 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
VPS13AQ96RL7 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
VPS13AQ96RL7 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
VPS13AQ96RL7 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
VPS13AQ96RL7 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
VPS13AQ96RL7 GRAMD4P7-201ENST00000578182 1232 ntBASIC25.02■■□□□ 1.6
VPS13AQ96RL7 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC25.02■■□□□ 1.6
VPS13AQ96RL7 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
VPS13AQ96RL7 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC25.02■■□□□ 1.6
VPS13AQ96RL7 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
VPS13AQ96RL7 IDNK-201ENST00000376417 511 ntTSL 5 BASIC25.01■■□□□ 1.59
VPS13AQ96RL7 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
VPS13AQ96RL7 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC25.01■■□□□ 1.59
VPS13AQ96RL7 AL359258.2-201ENST00000564063 1566 ntBASIC25.01■■□□□ 1.59
VPS13AQ96RL7 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
VPS13AQ96RL7 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
VPS13AQ96RL7 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
VPS13AQ96RL7 HYI-210ENST00000486909 905 ntTSL 5 BASIC24.99■■□□□ 1.59
VPS13AQ96RL7 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC24.99■■□□□ 1.59
VPS13AQ96RL7 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC24.99■■□□□ 1.59
VPS13AQ96RL7 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC24.99■■□□□ 1.59
VPS13AQ96RL7 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
VPS13AQ96RL7 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
VPS13AQ96RL7 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
VPS13AQ96RL7 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
VPS13AQ96RL7 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC24.98■■□□□ 1.59
VPS13AQ96RL7 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC24.98■■□□□ 1.59
VPS13AQ96RL7 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
VPS13AQ96RL7 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
VPS13AQ96RL7 IDNK-203ENST00000405990 629 ntTSL 2 BASIC24.98■■□□□ 1.59
VPS13AQ96RL7 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
VPS13AQ96RL7 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
VPS13AQ96RL7 AC100797.4-201ENST00000631653 1827 ntBASIC24.96■■□□□ 1.59
VPS13AQ96RL7 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC24.96■■□□□ 1.59
VPS13AQ96RL7 AC092666.2-201ENST00000613287 246 ntBASIC24.96■■□□□ 1.59
VPS13AQ96RL7 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
VPS13AQ96RL7 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC24.95■■□□□ 1.59
VPS13AQ96RL7 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC24.95■■□□□ 1.59
VPS13AQ96RL7 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC24.95■■□□□ 1.58
VPS13AQ96RL7 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
VPS13AQ96RL7 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC24.95■■□□□ 1.58
VPS13AQ96RL7 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
VPS13AQ96RL7 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
VPS13AQ96RL7 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC24.93■■□□□ 1.58
VPS13AQ96RL7 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC24.93■■□□□ 1.58
VPS13AQ96RL7 CREM-229ENST00000474362 1030 ntTSL 2 BASIC24.93■■□□□ 1.58
VPS13AQ96RL7 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC24.93■■□□□ 1.58
VPS13AQ96RL7 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC24.93■■□□□ 1.58
VPS13AQ96RL7 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
VPS13AQ96RL7 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
VPS13AQ96RL7 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC24.92■■□□□ 1.58
VPS13AQ96RL7 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
VPS13AQ96RL7 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
VPS13AQ96RL7 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.92■■□□□ 1.58
VPS13AQ96RL7 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC24.9■■□□□ 1.58
VPS13AQ96RL7 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
VPS13AQ96RL7 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
VPS13AQ96RL7 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
VPS13AQ96RL7 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
VPS13AQ96RL7 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC24.89■■□□□ 1.57
VPS13AQ96RL7 AC131281.2-201ENST00000520478 145 ntBASIC24.89■■□□□ 1.57
VPS13AQ96RL7 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.57
VPS13AQ96RL7 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
VPS13AQ96RL7 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
VPS13AQ96RL7 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC24.88■■□□□ 1.57
VPS13AQ96RL7 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
VPS13AQ96RL7 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
VPS13AQ96RL7 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC24.87■■□□□ 1.57
VPS13AQ96RL7 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC24.87■■□□□ 1.57
VPS13AQ96RL7 TK2-216ENST00000564917 1156 ntTSL 3 BASIC24.87■■□□□ 1.57
VPS13AQ96RL7 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
VPS13AQ96RL7 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC24.86■■□□□ 1.57
VPS13AQ96RL7 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC24.86■■□□□ 1.57
VPS13AQ96RL7 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC24.86■■□□□ 1.57
VPS13AQ96RL7 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC24.86■■□□□ 1.57
VPS13AQ96RL7 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC24.86■■□□□ 1.57
VPS13AQ96RL7 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC24.86■■□□□ 1.57
VPS13AQ96RL7 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
VPS13AQ96RL7 MEST-211ENST00000437945 1455 ntTSL 5 BASIC24.85■■□□□ 1.57
VPS13AQ96RL7 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC24.85■■□□□ 1.57
VPS13AQ96RL7 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC24.85■■□□□ 1.57
VPS13AQ96RL7 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC24.85■■□□□ 1.57
VPS13AQ96RL7 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC24.85■■□□□ 1.57
VPS13AQ96RL7 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
VPS13AQ96RL7 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC24.84■■□□□ 1.57
VPS13AQ96RL7 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC24.84■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms