Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC22.77■■□□□ 1.24
DEPDC4Q8N2C3 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC22.77■■□□□ 1.24
DEPDC4Q8N2C3 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
DEPDC4Q8N2C3 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
DEPDC4Q8N2C3 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
DEPDC4Q8N2C3 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
DEPDC4Q8N2C3 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
DEPDC4Q8N2C3 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC22.76■■□□□ 1.23
DEPDC4Q8N2C3 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
DEPDC4Q8N2C3 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC22.76■■□□□ 1.23
DEPDC4Q8N2C3 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC22.76■■□□□ 1.23
DEPDC4Q8N2C3 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
DEPDC4Q8N2C3 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC22.75■■□□□ 1.23
DEPDC4Q8N2C3 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
DEPDC4Q8N2C3 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
DEPDC4Q8N2C3 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC22.75■■□□□ 1.23
DEPDC4Q8N2C3 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
DEPDC4Q8N2C3 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC22.75■■□□□ 1.23
DEPDC4Q8N2C3 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
DEPDC4Q8N2C3 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC22.75■■□□□ 1.23
DEPDC4Q8N2C3 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
DEPDC4Q8N2C3 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
DEPDC4Q8N2C3 AC092803.2-201ENST00000564287 1899 ntBASIC22.73■■□□□ 1.23
DEPDC4Q8N2C3 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
DEPDC4Q8N2C3 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
DEPDC4Q8N2C3 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
DEPDC4Q8N2C3 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC22.73■■□□□ 1.23
DEPDC4Q8N2C3 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
DEPDC4Q8N2C3 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
DEPDC4Q8N2C3 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
DEPDC4Q8N2C3 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
DEPDC4Q8N2C3 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
DEPDC4Q8N2C3 EI24-212ENST00000615917 1407 ntTSL 2 BASIC22.72■■□□□ 1.23
DEPDC4Q8N2C3 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
DEPDC4Q8N2C3 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC22.71■■□□□ 1.23
DEPDC4Q8N2C3 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
DEPDC4Q8N2C3 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
DEPDC4Q8N2C3 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
DEPDC4Q8N2C3 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
DEPDC4Q8N2C3 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
DEPDC4Q8N2C3 HLA-V-202ENST00000446817 847 ntBASIC22.7■■□□□ 1.22
DEPDC4Q8N2C3 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
DEPDC4Q8N2C3 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC22.7■■□□□ 1.22
DEPDC4Q8N2C3 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC22.69■■□□□ 1.22
DEPDC4Q8N2C3 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC22.69■■□□□ 1.22
DEPDC4Q8N2C3 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
DEPDC4Q8N2C3 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
DEPDC4Q8N2C3 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
DEPDC4Q8N2C3 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC22.68■■□□□ 1.22
DEPDC4Q8N2C3 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
DEPDC4Q8N2C3 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC22.68■■□□□ 1.22
DEPDC4Q8N2C3 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.68■■□□□ 1.22
DEPDC4Q8N2C3 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
DEPDC4Q8N2C3 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
DEPDC4Q8N2C3 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
DEPDC4Q8N2C3 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC22.67■■□□□ 1.22
DEPDC4Q8N2C3 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
DEPDC4Q8N2C3 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
DEPDC4Q8N2C3 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC22.66■■□□□ 1.22
DEPDC4Q8N2C3 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
DEPDC4Q8N2C3 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
DEPDC4Q8N2C3 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
DEPDC4Q8N2C3 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
DEPDC4Q8N2C3 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
DEPDC4Q8N2C3 SNAI3-AS1-204ENST00000567997 2048 ntBASIC22.65■■□□□ 1.22
DEPDC4Q8N2C3 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
DEPDC4Q8N2C3 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
DEPDC4Q8N2C3 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
DEPDC4Q8N2C3 AC135983.2-203ENST00000454486 1613 ntBASIC22.65■■□□□ 1.22
DEPDC4Q8N2C3 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC22.65■■□□□ 1.22
DEPDC4Q8N2C3 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
DEPDC4Q8N2C3 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.64■■□□□ 1.22
DEPDC4Q8N2C3 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
DEPDC4Q8N2C3 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC22.64■■□□□ 1.21
DEPDC4Q8N2C3 LINC01971-201ENST00000617888 1048 ntBASIC22.64■■□□□ 1.21
DEPDC4Q8N2C3 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
DEPDC4Q8N2C3 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
DEPDC4Q8N2C3 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
DEPDC4Q8N2C3 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
DEPDC4Q8N2C3 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
DEPDC4Q8N2C3 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
DEPDC4Q8N2C3 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
DEPDC4Q8N2C3 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC22.63■■□□□ 1.21
DEPDC4Q8N2C3 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.63■■□□□ 1.21
DEPDC4Q8N2C3 AC093323.1-202ENST00000635031 2045 ntBASIC22.63■■□□□ 1.21
DEPDC4Q8N2C3 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
DEPDC4Q8N2C3 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
DEPDC4Q8N2C3 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC22.62■■□□□ 1.21
DEPDC4Q8N2C3 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
DEPDC4Q8N2C3 MBP-237ENST00000579129 1052 ntTSL 5 BASIC22.62■■□□□ 1.21
DEPDC4Q8N2C3 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
DEPDC4Q8N2C3 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.62■■□□□ 1.21
DEPDC4Q8N2C3 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC22.61■■□□□ 1.21
DEPDC4Q8N2C3 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
DEPDC4Q8N2C3 AP004609.3-201ENST00000610705 1884 ntBASIC22.61■■□□□ 1.21
DEPDC4Q8N2C3 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
DEPDC4Q8N2C3 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC22.6■■□□□ 1.21
DEPDC4Q8N2C3 AGPS-202ENST00000409888 815 ntTSL 4 BASIC22.6■■□□□ 1.21
DEPDC4Q8N2C3 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC22.6■■□□□ 1.21
DEPDC4Q8N2C3 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms