Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 BHLHE23-202ENST00000612929 1109 ntBASIC17.58■□□□□ 0.4
CSMD3Q7Z407 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CSMD3Q7Z407 PRTG-204ENST00000561292 833 ntTSL 3 BASIC17.58■□□□□ 0.4
CSMD3Q7Z407 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CSMD3Q7Z407 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CSMD3Q7Z407 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CSMD3Q7Z407 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC17.57■□□□□ 0.4
CSMD3Q7Z407 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC17.57■□□□□ 0.4
CSMD3Q7Z407 AL359258.2-201ENST00000564063 1566 ntBASIC17.57■□□□□ 0.4
CSMD3Q7Z407 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
CSMD3Q7Z407 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC17.57■□□□□ 0.4
CSMD3Q7Z407 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC17.56■□□□□ 0.4
CSMD3Q7Z407 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CSMD3Q7Z407 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CSMD3Q7Z407 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
CSMD3Q7Z407 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC17.56■□□□□ 0.4
CSMD3Q7Z407 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC17.56■□□□□ 0.4
CSMD3Q7Z407 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CSMD3Q7Z407 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CSMD3Q7Z407 AC093536.1-201ENST00000569153 554 ntBASIC17.56■□□□□ 0.4
CSMD3Q7Z407 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CSMD3Q7Z407 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CSMD3Q7Z407 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC17.55■□□□□ 0.4
CSMD3Q7Z407 Z92544.1-202ENST00000571933 1220 ntBASIC17.55■□□□□ 0.4
CSMD3Q7Z407 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CSMD3Q7Z407 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CSMD3Q7Z407 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CSMD3Q7Z407 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CSMD3Q7Z407 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC17.54■□□□□ 0.4
CSMD3Q7Z407 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CSMD3Q7Z407 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CSMD3Q7Z407 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CSMD3Q7Z407 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC17.53■□□□□ 0.4
CSMD3Q7Z407 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CSMD3Q7Z407 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CSMD3Q7Z407 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CSMD3Q7Z407 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CSMD3Q7Z407 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CSMD3Q7Z407 AC239859.2-201ENST00000444165 318 ntBASIC17.52■□□□□ 0.4
CSMD3Q7Z407 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CSMD3Q7Z407 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC17.52■□□□□ 0.4
CSMD3Q7Z407 IDNK-201ENST00000376417 511 ntTSL 5 BASIC17.52■□□□□ 0.39
CSMD3Q7Z407 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CSMD3Q7Z407 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CSMD3Q7Z407 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CSMD3Q7Z407 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
CSMD3Q7Z407 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC17.51■□□□□ 0.39
CSMD3Q7Z407 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CSMD3Q7Z407 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CSMD3Q7Z407 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC17.5■□□□□ 0.39
CSMD3Q7Z407 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CSMD3Q7Z407 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
CSMD3Q7Z407 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CSMD3Q7Z407 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CSMD3Q7Z407 HYI-210ENST00000486909 905 ntTSL 5 BASIC17.49■□□□□ 0.39
CSMD3Q7Z407 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC17.49■□□□□ 0.39
CSMD3Q7Z407 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CSMD3Q7Z407 PFN2-211ENST00000489155 636 ntTSL 4 BASIC17.49■□□□□ 0.39
CSMD3Q7Z407 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CSMD3Q7Z407 YBX1P4-201ENST00000392794 808 ntBASIC17.48■□□□□ 0.39
CSMD3Q7Z407 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC17.48■□□□□ 0.39
CSMD3Q7Z407 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CSMD3Q7Z407 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC17.48■□□□□ 0.39
CSMD3Q7Z407 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CSMD3Q7Z407 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CSMD3Q7Z407 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC17.48■□□□□ 0.39
CSMD3Q7Z407 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CSMD3Q7Z407 AC074183.2-201ENST00000623112 922 ntBASIC17.48■□□□□ 0.39
CSMD3Q7Z407 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CSMD3Q7Z407 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC17.47■□□□□ 0.39
CSMD3Q7Z407 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CSMD3Q7Z407 MIR638-201ENST00000385237 100 ntBASIC17.47■□□□□ 0.39
CSMD3Q7Z407 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC17.47■□□□□ 0.39
CSMD3Q7Z407 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CSMD3Q7Z407 IDNK-203ENST00000405990 629 ntTSL 2 BASIC17.46■□□□□ 0.39
CSMD3Q7Z407 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC17.46■□□□□ 0.39
CSMD3Q7Z407 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CSMD3Q7Z407 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CSMD3Q7Z407 PEMT-206ENST00000435340 960 ntTSL 5 BASIC17.46■□□□□ 0.39
CSMD3Q7Z407 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC17.46■□□□□ 0.39
CSMD3Q7Z407 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC17.46■□□□□ 0.39
CSMD3Q7Z407 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC17.45■□□□□ 0.38
CSMD3Q7Z407 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CSMD3Q7Z407 AL031848.2-201ENST00000607670 837 ntBASIC17.45■□□□□ 0.38
CSMD3Q7Z407 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC17.45■□□□□ 0.38
CSMD3Q7Z407 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CSMD3Q7Z407 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CSMD3Q7Z407 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CSMD3Q7Z407 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CSMD3Q7Z407 AC008406.3-201ENST00000620001 1374 ntBASIC17.45■□□□□ 0.38
CSMD3Q7Z407 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CSMD3Q7Z407 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CSMD3Q7Z407 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC17.44■□□□□ 0.38
CSMD3Q7Z407 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC17.44■□□□□ 0.38
CSMD3Q7Z407 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CSMD3Q7Z407 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC17.43■□□□□ 0.38
CSMD3Q7Z407 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CSMD3Q7Z407 ST7-AS1-201ENST00000456775 1889 ntBASIC17.43■□□□□ 0.38
CSMD3Q7Z407 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC17.43■□□□□ 0.38
CSMD3Q7Z407 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms