Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MIR4508-201ENST00000584178 70 ntBASIC31.95■■■□□ 2.71
COL5A3P25940 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC31.95■■■□□ 2.7
COL5A3P25940 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC31.95■■■□□ 2.7
COL5A3P25940 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC31.95■■■□□ 2.7
COL5A3P25940 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
COL5A3P25940 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC31.94■■■□□ 2.7
COL5A3P25940 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
COL5A3P25940 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC31.94■■■□□ 2.7
COL5A3P25940 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
COL5A3P25940 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
COL5A3P25940 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC31.93■■■□□ 2.7
COL5A3P25940 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
COL5A3P25940 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
COL5A3P25940 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
COL5A3P25940 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
COL5A3P25940 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC31.92■■■□□ 2.7
COL5A3P25940 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC31.92■■■□□ 2.7
COL5A3P25940 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL5A3P25940 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL5A3P25940 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC31.91■■■□□ 2.7
COL5A3P25940 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC31.91■■■□□ 2.7
COL5A3P25940 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
COL5A3P25940 AP002414.2-202ENST00000590929 1450 ntBASIC31.91■■■□□ 2.7
COL5A3P25940 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
COL5A3P25940 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
COL5A3P25940 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.9■■■□□ 2.7
COL5A3P25940 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC31.89■■■□□ 2.7
COL5A3P25940 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC31.89■■■□□ 2.7
COL5A3P25940 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC31.89■■■□□ 2.7
COL5A3P25940 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
COL5A3P25940 AC139795.1-202ENST00000500444 432 ntBASIC31.89■■■□□ 2.69
COL5A3P25940 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC31.89■■■□□ 2.69
COL5A3P25940 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
COL5A3P25940 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC31.88■■■□□ 2.69
COL5A3P25940 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC31.87■■■□□ 2.69
COL5A3P25940 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC31.87■■■□□ 2.69
COL5A3P25940 AC103834.1-201ENST00000520383 144 ntBASIC31.87■■■□□ 2.69
COL5A3P25940 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
COL5A3P25940 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC31.87■■■□□ 2.69
COL5A3P25940 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
COL5A3P25940 AC103724.3-201ENST00000564481 992 ntBASIC31.86■■■□□ 2.69
COL5A3P25940 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC31.86■■■□□ 2.69
COL5A3P25940 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
COL5A3P25940 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
COL5A3P25940 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC31.85■■■□□ 2.69
COL5A3P25940 AC074183.2-201ENST00000623112 922 ntBASIC31.85■■■□□ 2.69
COL5A3P25940 ABCB10P3-201ENST00000561950 2166 ntBASIC31.85■■■□□ 2.69
COL5A3P25940 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
COL5A3P25940 AL592295.1-201ENST00000400984 884 ntBASIC31.84■■■□□ 2.69
COL5A3P25940 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.84■■■□□ 2.69
COL5A3P25940 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC31.83■■■□□ 2.69
COL5A3P25940 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
COL5A3P25940 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC31.83■■■□□ 2.69
COL5A3P25940 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
COL5A3P25940 GUSBP5-201ENST00000418136 578 ntBASIC31.83■■■□□ 2.69
COL5A3P25940 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
COL5A3P25940 IDNK-203ENST00000405990 629 ntTSL 2 BASIC31.82■■■□□ 2.68
COL5A3P25940 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC31.82■■■□□ 2.68
COL5A3P25940 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL5A3P25940 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC31.81■■■□□ 2.68
COL5A3P25940 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL5A3P25940 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL5A3P25940 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL5A3P25940 HYI-210ENST00000486909 905 ntTSL 5 BASIC31.81■■■□□ 2.68
COL5A3P25940 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
COL5A3P25940 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
COL5A3P25940 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC31.8■■■□□ 2.68
COL5A3P25940 HES6-204ENST00000409182 863 ntTSL 2 BASIC31.8■■■□□ 2.68
COL5A3P25940 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC31.79■■■□□ 2.68
COL5A3P25940 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC31.79■■■□□ 2.68
COL5A3P25940 AC019069.1-201ENST00000610008 1333 ntBASIC31.79■■■□□ 2.68
COL5A3P25940 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
COL5A3P25940 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
COL5A3P25940 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL5A3P25940 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL5A3P25940 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC31.77■■■□□ 2.68
COL5A3P25940 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
COL5A3P25940 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC31.76■■■□□ 2.67
COL5A3P25940 BHLHE23-202ENST00000612929 1109 ntBASIC31.76■■■□□ 2.67
COL5A3P25940 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC31.76■■■□□ 2.67
COL5A3P25940 AL139393.2-201ENST00000608721 2025 ntBASIC31.76■■■□□ 2.67
COL5A3P25940 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC31.75■■■□□ 2.67
COL5A3P25940 AL359504.2-201ENST00000605506 1601 ntBASIC31.75■■■□□ 2.67
COL5A3P25940 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.75■■■□□ 2.67
COL5A3P25940 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
COL5A3P25940 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
COL5A3P25940 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC31.74■■■□□ 2.67
COL5A3P25940 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC31.74■■■□□ 2.67
COL5A3P25940 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
COL5A3P25940 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC31.73■■■□□ 2.67
COL5A3P25940 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC31.73■■■□□ 2.67
COL5A3P25940 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
COL5A3P25940 AC131212.1-201ENST00000613771 668 ntBASIC31.73■■■□□ 2.67
COL5A3P25940 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC31.72■■■□□ 2.67
COL5A3P25940 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.72■■■□□ 2.67
COL5A3P25940 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
COL5A3P25940 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC31.72■■■□□ 2.67
COL5A3P25940 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC31.72■■■□□ 2.67
COL5A3P25940 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC31.71■■■□□ 2.67
COL5A3P25940 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC31.7■■■□□ 2.67
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms