Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
AP1S3Q96PC3 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
AP1S3Q96PC3 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
AP1S3Q96PC3 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
AP1S3Q96PC3 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
AP1S3Q96PC3 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
AP1S3Q96PC3 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
AP1S3Q96PC3 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
AP1S3Q96PC3 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
AP1S3Q96PC3 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
AP1S3Q96PC3 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC18.63■□□□□ 0.57
AP1S3Q96PC3 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC18.63■□□□□ 0.57
AP1S3Q96PC3 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
AP1S3Q96PC3 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
AP1S3Q96PC3 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
AP1S3Q96PC3 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
AP1S3Q96PC3 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
AP1S3Q96PC3 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
AP1S3Q96PC3 SHF-208ENST00000560734 1731 ntTSL 3 BASIC18.61■□□□□ 0.57
AP1S3Q96PC3 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
AP1S3Q96PC3 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
AP1S3Q96PC3 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC18.61■□□□□ 0.57
AP1S3Q96PC3 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP1S3Q96PC3 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP1S3Q96PC3 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP1S3Q96PC3 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
AP1S3Q96PC3 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP1S3Q96PC3 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP1S3Q96PC3 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
AP1S3Q96PC3 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
AP1S3Q96PC3 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
AP1S3Q96PC3 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
AP1S3Q96PC3 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC18.59■□□□□ 0.57
AP1S3Q96PC3 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
AP1S3Q96PC3 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC18.59■□□□□ 0.57
AP1S3Q96PC3 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
AP1S3Q96PC3 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
AP1S3Q96PC3 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.58■□□□□ 0.57
AP1S3Q96PC3 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
AP1S3Q96PC3 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
AP1S3Q96PC3 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC18.58■□□□□ 0.56
AP1S3Q96PC3 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
AP1S3Q96PC3 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
AP1S3Q96PC3 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
AP1S3Q96PC3 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
AP1S3Q96PC3 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
AP1S3Q96PC3 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
AP1S3Q96PC3 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC18.57■□□□□ 0.56
AP1S3Q96PC3 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
AP1S3Q96PC3 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
AP1S3Q96PC3 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC18.57■□□□□ 0.56
AP1S3Q96PC3 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
AP1S3Q96PC3 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
AP1S3Q96PC3 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
AP1S3Q96PC3 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
AP1S3Q96PC3 LTK-203ENST00000453182 2412 ntTSL 2 BASIC18.57■□□□□ 0.56
AP1S3Q96PC3 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
AP1S3Q96PC3 LINC01003-201ENST00000564834 1764 ntBASIC18.56■□□□□ 0.56
AP1S3Q96PC3 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
AP1S3Q96PC3 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC18.56■□□□□ 0.56
AP1S3Q96PC3 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
AP1S3Q96PC3 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
AP1S3Q96PC3 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
AP1S3Q96PC3 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
AP1S3Q96PC3 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP1S3Q96PC3 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
AP1S3Q96PC3 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP1S3Q96PC3 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP1S3Q96PC3 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
AP1S3Q96PC3 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC18.55■□□□□ 0.56
AP1S3Q96PC3 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
AP1S3Q96PC3 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC18.55■□□□□ 0.56
AP1S3Q96PC3 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
AP1S3Q96PC3 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP1S3Q96PC3 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
AP1S3Q96PC3 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
AP1S3Q96PC3 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP1S3Q96PC3 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
AP1S3Q96PC3 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC18.54■□□□□ 0.56
AP1S3Q96PC3 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
AP1S3Q96PC3 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP1S3Q96PC3 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP1S3Q96PC3 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP1S3Q96PC3 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP1S3Q96PC3 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
AP1S3Q96PC3 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
AP1S3Q96PC3 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP1S3Q96PC3 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC18.53■□□□□ 0.56
AP1S3Q96PC3 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP1S3Q96PC3 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC18.53■□□□□ 0.56
AP1S3Q96PC3 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP1S3Q96PC3 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
AP1S3Q96PC3 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP1S3Q96PC3 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP1S3Q96PC3 AC127502.1-201ENST00000399971 1502 ntBASIC18.53■□□□□ 0.56
AP1S3Q96PC3 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP1S3Q96PC3 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC18.53■□□□□ 0.56
AP1S3Q96PC3 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP1S3Q96PC3 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP1S3Q96PC3 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms