Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC30.72■■■□□ 2.51
COL4A5P29400 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
COL4A5P29400 BEX3-202ENST00000372634 753 ntTSL 2 BASIC30.72■■■□□ 2.51
COL4A5P29400 AC009299.2-201ENST00000482477 511 ntBASIC30.72■■■□□ 2.51
COL4A5P29400 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC30.72■■■□□ 2.51
COL4A5P29400 AC010980.1-201ENST00000587192 1142 ntBASIC30.72■■■□□ 2.51
COL4A5P29400 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
COL4A5P29400 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
COL4A5P29400 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
COL4A5P29400 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
COL4A5P29400 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.71■■■□□ 2.51
COL4A5P29400 KRT8P33-201ENST00000508125 1423 ntBASIC30.7■■■□□ 2.51
COL4A5P29400 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
COL4A5P29400 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
COL4A5P29400 AC093536.1-201ENST00000569153 554 ntBASIC30.69■■■□□ 2.5
COL4A5P29400 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC30.68■■■□□ 2.5
COL4A5P29400 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
COL4A5P29400 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
COL4A5P29400 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC30.68■■■□□ 2.5
COL4A5P29400 AL359258.2-201ENST00000564063 1566 ntBASIC30.67■■■□□ 2.5
COL4A5P29400 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
COL4A5P29400 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC30.67■■■□□ 2.5
COL4A5P29400 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC30.67■■■□□ 2.5
COL4A5P29400 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
COL4A5P29400 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
COL4A5P29400 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
COL4A5P29400 PVT1_1.1-201ENST00000615125 194 ntBASIC30.66■■■□□ 2.5
COL4A5P29400 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC30.66■■■□□ 2.5
COL4A5P29400 MTURN-203ENST00000409688 843 ntTSL 2 BASIC30.65■■■□□ 2.5
COL4A5P29400 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC30.65■■■□□ 2.5
COL4A5P29400 AC100797.4-201ENST00000631653 1827 ntBASIC30.65■■■□□ 2.5
COL4A5P29400 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL4A5P29400 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL4A5P29400 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL4A5P29400 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC30.64■■■□□ 2.5
COL4A5P29400 AC019069.1-201ENST00000610008 1333 ntBASIC30.64■■■□□ 2.5
COL4A5P29400 AC103834.1-201ENST00000520383 144 ntBASIC30.64■■■□□ 2.5
COL4A5P29400 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL4A5P29400 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
COL4A5P29400 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
COL4A5P29400 RP9P-202ENST00000450133 1212 ntBASIC30.62■■■□□ 2.49
COL4A5P29400 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
COL4A5P29400 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC30.61■■■□□ 2.49
COL4A5P29400 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC30.61■■■□□ 2.49
COL4A5P29400 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
COL4A5P29400 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
COL4A5P29400 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC30.61■■■□□ 2.49
COL4A5P29400 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
COL4A5P29400 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
COL4A5P29400 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
COL4A5P29400 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
COL4A5P29400 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC30.61■■■□□ 2.49
COL4A5P29400 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC30.61■■■□□ 2.49
COL4A5P29400 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
COL4A5P29400 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC30.6■■■□□ 2.49
COL4A5P29400 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC30.6■■■□□ 2.49
COL4A5P29400 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC30.6■■■□□ 2.49
COL4A5P29400 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC30.6■■■□□ 2.49
COL4A5P29400 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
COL4A5P29400 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
COL4A5P29400 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC30.58■■■□□ 2.49
COL4A5P29400 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC30.58■■■□□ 2.49
COL4A5P29400 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC30.57■■■□□ 2.48
COL4A5P29400 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC30.57■■■□□ 2.48
COL4A5P29400 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC30.57■■■□□ 2.48
COL4A5P29400 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
COL4A5P29400 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
COL4A5P29400 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC30.56■■■□□ 2.48
COL4A5P29400 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC30.56■■■□□ 2.48
COL4A5P29400 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
COL4A5P29400 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC30.55■■■□□ 2.48
COL4A5P29400 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
COL4A5P29400 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
COL4A5P29400 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
COL4A5P29400 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
COL4A5P29400 GUSBP5-201ENST00000418136 578 ntBASIC30.54■■■□□ 2.48
COL4A5P29400 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
COL4A5P29400 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC30.53■■■□□ 2.48
COL4A5P29400 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
COL4A5P29400 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
COL4A5P29400 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC30.52■■■□□ 2.48
COL4A5P29400 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC30.52■■■□□ 2.48
COL4A5P29400 AP004833.2-201ENST00000532228 1454 ntBASIC30.52■■■□□ 2.48
COL4A5P29400 AC131212.1-201ENST00000613771 668 ntBASIC30.52■■■□□ 2.48
COL4A5P29400 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC30.52■■■□□ 2.48
COL4A5P29400 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC30.51■■■□□ 2.47
COL4A5P29400 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
COL4A5P29400 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC30.51■■■□□ 2.47
COL4A5P29400 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC30.51■■■□□ 2.47
COL4A5P29400 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
COL4A5P29400 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC30.5■■■□□ 2.47
COL4A5P29400 HES6-204ENST00000409182 863 ntTSL 2 BASIC30.49■■■□□ 2.47
COL4A5P29400 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC30.49■■■□□ 2.47
COL4A5P29400 BHLHE23-202ENST00000612929 1109 ntBASIC30.49■■■□□ 2.47
COL4A5P29400 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL4A5P29400 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC30.49■■■□□ 2.47
COL4A5P29400 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL4A5P29400 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
COL4A5P29400 MIR6765-201ENST00000614092 87 ntBASIC30.49■■■□□ 2.47
COL4A5P29400 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms