Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 PEX7-203ENST00000541292 945 ntTSL 5 BASIC20.01■□□□□ 0.79
COL6A5A8TX70 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A5A8TX70 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A5A8TX70 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20.01■□□□□ 0.79
COL6A5A8TX70 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL6A5A8TX70 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL6A5A8TX70 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL6A5A8TX70 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
COL6A5A8TX70 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL6A5A8TX70 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL6A5A8TX70 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL6A5A8TX70 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A5A8TX70 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A5A8TX70 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A5A8TX70 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
COL6A5A8TX70 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL6A5A8TX70 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.99■□□□□ 0.79
COL6A5A8TX70 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL6A5A8TX70 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
COL6A5A8TX70 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC19.98■□□□□ 0.79
COL6A5A8TX70 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.97■□□□□ 0.79
COL6A5A8TX70 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A5A8TX70 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A5A8TX70 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A5A8TX70 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.97■□□□□ 0.79
COL6A5A8TX70 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A5A8TX70 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL6A5A8TX70 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC19.96■□□□□ 0.79
COL6A5A8TX70 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
COL6A5A8TX70 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A5A8TX70 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A5A8TX70 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
COL6A5A8TX70 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A5A8TX70 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A5A8TX70 AC026271.2-201ENST00000428091 497 ntBASIC19.95■□□□□ 0.78
COL6A5A8TX70 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
COL6A5A8TX70 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.95■□□□□ 0.78
COL6A5A8TX70 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC19.95■□□□□ 0.78
COL6A5A8TX70 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC19.95■□□□□ 0.78
COL6A5A8TX70 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A5A8TX70 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A5A8TX70 AC005837.3-201ENST00000612163 286 ntBASIC19.94■□□□□ 0.78
COL6A5A8TX70 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A5A8TX70 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A5A8TX70 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A5A8TX70 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
COL6A5A8TX70 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
COL6A5A8TX70 IDNK-201ENST00000376417 511 ntTSL 5 BASIC19.93■□□□□ 0.78
COL6A5A8TX70 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A5A8TX70 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
COL6A5A8TX70 RNF146-205ENST00000477776 762 ntTSL 3 BASIC19.93■□□□□ 0.78
COL6A5A8TX70 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL6A5A8TX70 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.92■□□□□ 0.78
COL6A5A8TX70 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC19.92■□□□□ 0.78
COL6A5A8TX70 AC120057.4-201ENST00000624722 1615 ntBASIC19.92■□□□□ 0.78
COL6A5A8TX70 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC19.92■□□□□ 0.78
COL6A5A8TX70 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL6A5A8TX70 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.92■□□□□ 0.78
COL6A5A8TX70 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.92■□□□□ 0.78
COL6A5A8TX70 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL6A5A8TX70 AC010864.1-201ENST00000609407 1511 ntBASIC19.92■□□□□ 0.78
COL6A5A8TX70 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
COL6A5A8TX70 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.91■□□□□ 0.78
COL6A5A8TX70 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC19.91■□□□□ 0.78
COL6A5A8TX70 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
COL6A5A8TX70 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL6A5A8TX70 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC19.9■□□□□ 0.78
COL6A5A8TX70 AC104564.3-201ENST00000582367 638 ntBASIC19.9■□□□□ 0.78
COL6A5A8TX70 KRT125P-201ENST00000546827 989 ntBASIC19.9■□□□□ 0.78
COL6A5A8TX70 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
COL6A5A8TX70 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
COL6A5A8TX70 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.89■□□□□ 0.77
COL6A5A8TX70 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL6A5A8TX70 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.89■□□□□ 0.77
COL6A5A8TX70 AC110285.6-201ENST00000617652 491 ntBASIC19.89■□□□□ 0.77
COL6A5A8TX70 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC19.89■□□□□ 0.77
COL6A5A8TX70 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A5A8TX70 AC127502.1-201ENST00000399971 1502 ntBASIC19.88■□□□□ 0.77
COL6A5A8TX70 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.88■□□□□ 0.77
COL6A5A8TX70 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.88■□□□□ 0.77
COL6A5A8TX70 AC131281.2-201ENST00000520478 145 ntBASIC19.88■□□□□ 0.77
COL6A5A8TX70 RARRES2P6-201ENST00000567333 442 ntBASIC19.88■□□□□ 0.77
COL6A5A8TX70 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.88■□□□□ 0.77
COL6A5A8TX70 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC19.88■□□□□ 0.77
COL6A5A8TX70 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A5A8TX70 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A5A8TX70 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A5A8TX70 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC19.87■□□□□ 0.77
COL6A5A8TX70 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.87■□□□□ 0.77
COL6A5A8TX70 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A5A8TX70 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A5A8TX70 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A5A8TX70 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A5A8TX70 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A5A8TX70 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC19.86■□□□□ 0.77
COL6A5A8TX70 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL6A5A8TX70 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.85■□□□□ 0.77
COL6A5A8TX70 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
COL6A5A8TX70 TK2-216ENST00000564917 1156 ntTSL 3 BASIC19.85■□□□□ 0.77
COL6A5A8TX70 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms