Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 PEX7-203ENST00000541292 945 ntTSL 5 BASIC39.24■■■■□ 3.87
COL17A1Q9UMD9 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC39.24■■■■□ 3.87
COL17A1Q9UMD9 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC39.24■■■■□ 3.87
COL17A1Q9UMD9 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC39.23■■■■□ 3.87
COL17A1Q9UMD9 AL356441.2-201ENST00000443009 864 ntBASIC39.23■■■■□ 3.87
COL17A1Q9UMD9 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC39.22■■■■□ 3.87
COL17A1Q9UMD9 LSM7-203ENST00000585409 512 ntTSL 2 BASIC39.22■■■■□ 3.87
COL17A1Q9UMD9 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC39.21■■■■□ 3.87
COL17A1Q9UMD9 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC39.2■■■■□ 3.87
COL17A1Q9UMD9 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC39.2■■■■□ 3.87
COL17A1Q9UMD9 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC39.19■■■■□ 3.86
COL17A1Q9UMD9 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC39.19■■■■□ 3.86
COL17A1Q9UMD9 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC39.19■■■■□ 3.86
COL17A1Q9UMD9 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC39.19■■■■□ 3.86
COL17A1Q9UMD9 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC39.18■■■■□ 3.86
COL17A1Q9UMD9 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC39.18■■■■□ 3.86
COL17A1Q9UMD9 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC39.18■■■■□ 3.86
COL17A1Q9UMD9 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC39.18■■■■□ 3.86
COL17A1Q9UMD9 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC39.18■■■■□ 3.86
COL17A1Q9UMD9 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC39.17■■■■□ 3.86
COL17A1Q9UMD9 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC39.17■■■■□ 3.86
COL17A1Q9UMD9 PVT1_1.1-201ENST00000615125 194 ntBASIC39.17■■■■□ 3.86
COL17A1Q9UMD9 SPCS2P3-201ENST00000500401 656 ntBASIC39.17■■■■□ 3.86
COL17A1Q9UMD9 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC39.16■■■■□ 3.86
COL17A1Q9UMD9 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC39.16■■■■□ 3.86
COL17A1Q9UMD9 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC39.15■■■■□ 3.86
COL17A1Q9UMD9 AC026202.3-201ENST00000600805 1127 ntBASIC39.15■■■■□ 3.86
COL17A1Q9UMD9 AC127502.1-201ENST00000399971 1502 ntBASIC39.15■■■■□ 3.86
COL17A1Q9UMD9 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC39.14■■■■□ 3.86
COL17A1Q9UMD9 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC39.13■■■■□ 3.86
COL17A1Q9UMD9 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC39.13■■■■□ 3.85
COL17A1Q9UMD9 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC39.13■■■■□ 3.85
COL17A1Q9UMD9 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC39.13■■■■□ 3.85
COL17A1Q9UMD9 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC39.13■■■■□ 3.85
COL17A1Q9UMD9 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC39.11■■■■□ 3.85
COL17A1Q9UMD9 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC39.11■■■■□ 3.85
COL17A1Q9UMD9 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC39.11■■■■□ 3.85
COL17A1Q9UMD9 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC39.11■■■■□ 3.85
COL17A1Q9UMD9 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC39.11■■■■□ 3.85
COL17A1Q9UMD9 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC39.1■■■■□ 3.85
COL17A1Q9UMD9 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC39.09■■■■□ 3.85
COL17A1Q9UMD9 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC39.09■■■■□ 3.85
COL17A1Q9UMD9 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC39.09■■■■□ 3.85
COL17A1Q9UMD9 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC39.09■■■■□ 3.85
COL17A1Q9UMD9 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC39.08■■■■□ 3.85
COL17A1Q9UMD9 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC39.08■■■■□ 3.85
COL17A1Q9UMD9 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC39.08■■■■□ 3.85
COL17A1Q9UMD9 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC39.07■■■■□ 3.85
COL17A1Q9UMD9 AC126177.7-201ENST00000547904 679 ntBASIC39.07■■■■□ 3.85
COL17A1Q9UMD9 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC39.07■■■■□ 3.84
COL17A1Q9UMD9 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC39.06■■■■□ 3.84
COL17A1Q9UMD9 AC074183.2-201ENST00000623112 922 ntBASIC39.06■■■■□ 3.84
COL17A1Q9UMD9 AL161658.1-201ENST00000623641 1967 ntBASIC39.06■■■■□ 3.84
COL17A1Q9UMD9 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC39.06■■■■□ 3.84
COL17A1Q9UMD9 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC39.06■■■■□ 3.84
COL17A1Q9UMD9 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC39.05■■■■□ 3.84
COL17A1Q9UMD9 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC39.05■■■■□ 3.84
COL17A1Q9UMD9 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC39.05■■■■□ 3.84
COL17A1Q9UMD9 REST-210ENST00000638187 1334 ntTSL 5 BASIC39.05■■■■□ 3.84
COL17A1Q9UMD9 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC39.05■■■■□ 3.84
COL17A1Q9UMD9 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC39.05■■■■□ 3.84
COL17A1Q9UMD9 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC39.04■■■■□ 3.84
COL17A1Q9UMD9 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC39.04■■■■□ 3.84
COL17A1Q9UMD9 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC39.04■■■■□ 3.84
COL17A1Q9UMD9 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC39.04■■■■□ 3.84
COL17A1Q9UMD9 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC39.03■■■■□ 3.84
COL17A1Q9UMD9 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC39.03■■■■□ 3.84
COL17A1Q9UMD9 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC39.03■■■■□ 3.84
COL17A1Q9UMD9 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC39.02■■■■□ 3.84
COL17A1Q9UMD9 AC025884.2-201ENST00000553429 711 ntBASIC39.02■■■■□ 3.84
COL17A1Q9UMD9 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC39.01■■■■□ 3.84
COL17A1Q9UMD9 BHLHE23-202ENST00000612929 1109 ntBASIC39.01■■■■□ 3.84
COL17A1Q9UMD9 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC39.01■■■■□ 3.83
COL17A1Q9UMD9 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC39■■■■□ 3.83
COL17A1Q9UMD9 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC39■■■■□ 3.83
COL17A1Q9UMD9 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC39■■■■□ 3.83
COL17A1Q9UMD9 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC39■■■■□ 3.83
COL17A1Q9UMD9 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC38.99■■■■□ 3.83
COL17A1Q9UMD9 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC38.99■■■■□ 3.83
COL17A1Q9UMD9 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC38.99■■■■□ 3.83
COL17A1Q9UMD9 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC38.98■■■■□ 3.83
COL17A1Q9UMD9 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC38.98■■■■□ 3.83
COL17A1Q9UMD9 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC38.98■■■■□ 3.83
COL17A1Q9UMD9 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC38.97■■■■□ 3.83
COL17A1Q9UMD9 YBX1P4-201ENST00000392794 808 ntBASIC38.97■■■■□ 3.83
COL17A1Q9UMD9 PRTG-204ENST00000561292 833 ntTSL 3 BASIC38.97■■■■□ 3.83
COL17A1Q9UMD9 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC38.97■■■■□ 3.83
COL17A1Q9UMD9 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC38.97■■■■□ 3.83
COL17A1Q9UMD9 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC38.96■■■■□ 3.83
COL17A1Q9UMD9 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC38.96■■■■□ 3.83
COL17A1Q9UMD9 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC38.95■■■■□ 3.83
COL17A1Q9UMD9 MIR4508-201ENST00000584178 70 ntBASIC38.95■■■■□ 3.83
COL17A1Q9UMD9 MIR6765-201ENST00000614092 87 ntBASIC38.95■■■■□ 3.83
COL17A1Q9UMD9 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC38.95■■■■□ 3.83
COL17A1Q9UMD9 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC38.95■■■■□ 3.83
COL17A1Q9UMD9 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC38.94■■■■□ 3.82
COL17A1Q9UMD9 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC38.93■■■■□ 3.82
COL17A1Q9UMD9 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC38.93■■■■□ 3.82
COL17A1Q9UMD9 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC38.92■■■■□ 3.82
COL17A1Q9UMD9 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC38.92■■■■□ 3.82
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms