Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 LINC01003-201ENST00000564834 1764 ntBASIC22.38■■□□□ 1.17
SEC61A2Q9H9S3 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SEC61A2Q9H9S3 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC22.38■■□□□ 1.17
SEC61A2Q9H9S3 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SEC61A2Q9H9S3 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SEC61A2Q9H9S3 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
SEC61A2Q9H9S3 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
SEC61A2Q9H9S3 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC22.37■■□□□ 1.17
SEC61A2Q9H9S3 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SEC61A2Q9H9S3 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SEC61A2Q9H9S3 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
SEC61A2Q9H9S3 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
SEC61A2Q9H9S3 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SEC61A2Q9H9S3 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC22.37■■□□□ 1.17
SEC61A2Q9H9S3 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SEC61A2Q9H9S3 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
SEC61A2Q9H9S3 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC22.36■■□□□ 1.17
SEC61A2Q9H9S3 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
SEC61A2Q9H9S3 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
SEC61A2Q9H9S3 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
SEC61A2Q9H9S3 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SEC61A2Q9H9S3 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
SEC61A2Q9H9S3 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC22.35■■□□□ 1.17
SEC61A2Q9H9S3 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
SEC61A2Q9H9S3 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
SEC61A2Q9H9S3 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
SEC61A2Q9H9S3 CR559946.2-201ENST00000623684 991 ntBASIC22.34■■□□□ 1.17
SEC61A2Q9H9S3 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
SEC61A2Q9H9S3 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SEC61A2Q9H9S3 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC22.33■■□□□ 1.17
SEC61A2Q9H9S3 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SEC61A2Q9H9S3 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
SEC61A2Q9H9S3 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
SEC61A2Q9H9S3 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
SEC61A2Q9H9S3 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
SEC61A2Q9H9S3 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
SEC61A2Q9H9S3 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SEC61A2Q9H9S3 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC22.32■■□□□ 1.16
SEC61A2Q9H9S3 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC22.32■■□□□ 1.16
SEC61A2Q9H9S3 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC22.32■■□□□ 1.16
SEC61A2Q9H9S3 RPS2-202ENST00000526522 924 ntTSL 2 BASIC22.32■■□□□ 1.16
SEC61A2Q9H9S3 CHML-204ENST00000638121 920 ntTSL 2 BASIC22.32■■□□□ 1.16
SEC61A2Q9H9S3 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SEC61A2Q9H9S3 AC110285.7-201ENST00000624417 1536 ntBASIC22.31■■□□□ 1.16
SEC61A2Q9H9S3 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
SEC61A2Q9H9S3 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SEC61A2Q9H9S3 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC22.31■■□□□ 1.16
SEC61A2Q9H9S3 DUX4L13-201ENST00000554103 1267 ntBASIC22.31■■□□□ 1.16
SEC61A2Q9H9S3 DUX4L15-201ENST00000611059 1267 ntBASIC22.31■■□□□ 1.16
SEC61A2Q9H9S3 DUX4L23-201ENST00000615195 1269 ntBASIC22.31■■□□□ 1.16
SEC61A2Q9H9S3 DUX4L24-201ENST00000617576 1269 ntBASIC22.31■■□□□ 1.16
SEC61A2Q9H9S3 DUX4L22-201ENST00000618238 1269 ntBASIC22.31■■□□□ 1.16
SEC61A2Q9H9S3 DUX4L20-201ENST00000619712 1269 ntBASIC22.31■■□□□ 1.16
SEC61A2Q9H9S3 DUX4L21-201ENST00000622058 1269 ntBASIC22.31■■□□□ 1.16
SEC61A2Q9H9S3 DUX4L10-201ENST00000622460 1267 ntBASIC22.31■■□□□ 1.16
SEC61A2Q9H9S3 DUX4L25-201ENST00000624915 1269 ntBASIC22.31■■□□□ 1.16
SEC61A2Q9H9S3 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
SEC61A2Q9H9S3 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SEC61A2Q9H9S3 MACF1-219ENST00000484793 834 ntTSL 2 BASIC22.3■■□□□ 1.16
SEC61A2Q9H9S3 MBP-237ENST00000579129 1052 ntTSL 5 BASIC22.3■■□□□ 1.16
SEC61A2Q9H9S3 MIR3648-2-201ENST00000581792 180 ntBASIC22.3■■□□□ 1.16
SEC61A2Q9H9S3 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC22.3■■□□□ 1.16
SEC61A2Q9H9S3 AC016575.1-201ENST00000607026 382 ntBASIC22.3■■□□□ 1.16
SEC61A2Q9H9S3 MIR3648-1-201ENST00000615959 180 ntBASIC22.3■■□□□ 1.16
SEC61A2Q9H9S3 GDI1-215ENST00000630693 786 ntTSL 4 BASIC22.3■■□□□ 1.16
SEC61A2Q9H9S3 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SEC61A2Q9H9S3 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SEC61A2Q9H9S3 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SEC61A2Q9H9S3 HLA-V-202ENST00000446817 847 ntBASIC22.29■■□□□ 1.16
SEC61A2Q9H9S3 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC22.29■■□□□ 1.16
SEC61A2Q9H9S3 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SEC61A2Q9H9S3 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
SEC61A2Q9H9S3 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SEC61A2Q9H9S3 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
SEC61A2Q9H9S3 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SEC61A2Q9H9S3 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC22.27■■□□□ 1.16
SEC61A2Q9H9S3 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC22.27■■□□□ 1.16
SEC61A2Q9H9S3 AC018358.1-201ENST00000631079 1402 ntBASIC22.27■■□□□ 1.16
SEC61A2Q9H9S3 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SEC61A2Q9H9S3 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
SEC61A2Q9H9S3 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
SEC61A2Q9H9S3 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC22.26■■□□□ 1.15
SEC61A2Q9H9S3 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
SEC61A2Q9H9S3 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
SEC61A2Q9H9S3 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC22.25■■□□□ 1.15
SEC61A2Q9H9S3 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SEC61A2Q9H9S3 SHF-208ENST00000560734 1731 ntTSL 3 BASIC22.25■■□□□ 1.15
SEC61A2Q9H9S3 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
SEC61A2Q9H9S3 AL121749.1-202ENST00000609313 2153 ntBASIC22.24■■□□□ 1.15
SEC61A2Q9H9S3 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SEC61A2Q9H9S3 AGPS-202ENST00000409888 815 ntTSL 4 BASIC22.24■■□□□ 1.15
SEC61A2Q9H9S3 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
SEC61A2Q9H9S3 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
SEC61A2Q9H9S3 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
SEC61A2Q9H9S3 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SEC61A2Q9H9S3 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SEC61A2Q9H9S3 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SEC61A2Q9H9S3 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC22.22■■□□□ 1.15
SEC61A2Q9H9S3 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
SEC61A2Q9H9S3 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms