Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC25.54■■□□□ 1.68
LRRC40Q9H9A6 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
LRRC40Q9H9A6 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
LRRC40Q9H9A6 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
LRRC40Q9H9A6 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
LRRC40Q9H9A6 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
LRRC40Q9H9A6 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC25.53■■□□□ 1.68
LRRC40Q9H9A6 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
LRRC40Q9H9A6 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
LRRC40Q9H9A6 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
LRRC40Q9H9A6 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25.52■■□□□ 1.68
LRRC40Q9H9A6 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
LRRC40Q9H9A6 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
LRRC40Q9H9A6 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
LRRC40Q9H9A6 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
LRRC40Q9H9A6 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
LRRC40Q9H9A6 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC25.51■■□□□ 1.67
LRRC40Q9H9A6 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
LRRC40Q9H9A6 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC25.5■■□□□ 1.67
LRRC40Q9H9A6 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
LRRC40Q9H9A6 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
LRRC40Q9H9A6 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC25.5■■□□□ 1.67
LRRC40Q9H9A6 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
LRRC40Q9H9A6 PEX7-203ENST00000541292 945 ntTSL 5 BASIC25.5■■□□□ 1.67
LRRC40Q9H9A6 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC25.49■■□□□ 1.67
LRRC40Q9H9A6 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
LRRC40Q9H9A6 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC25.49■■□□□ 1.67
LRRC40Q9H9A6 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
LRRC40Q9H9A6 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
LRRC40Q9H9A6 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
LRRC40Q9H9A6 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
LRRC40Q9H9A6 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
LRRC40Q9H9A6 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
LRRC40Q9H9A6 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC25.48■■□□□ 1.67
LRRC40Q9H9A6 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.48■■□□□ 1.67
LRRC40Q9H9A6 LINC01971-201ENST00000617888 1048 ntBASIC25.48■■□□□ 1.67
LRRC40Q9H9A6 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
LRRC40Q9H9A6 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
LRRC40Q9H9A6 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
LRRC40Q9H9A6 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
LRRC40Q9H9A6 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
LRRC40Q9H9A6 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC25.47■■□□□ 1.67
LRRC40Q9H9A6 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
LRRC40Q9H9A6 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.46■■□□□ 1.67
LRRC40Q9H9A6 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC25.46■■□□□ 1.67
LRRC40Q9H9A6 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
LRRC40Q9H9A6 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
LRRC40Q9H9A6 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.45■■□□□ 1.67
LRRC40Q9H9A6 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.67
LRRC40Q9H9A6 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
LRRC40Q9H9A6 MLEC-202ENST00000412616 841 ntTSL 3 BASIC25.45■■□□□ 1.66
LRRC40Q9H9A6 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.44■■□□□ 1.66
LRRC40Q9H9A6 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC25.44■■□□□ 1.66
LRRC40Q9H9A6 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
LRRC40Q9H9A6 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC25.44■■□□□ 1.66
LRRC40Q9H9A6 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
LRRC40Q9H9A6 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
LRRC40Q9H9A6 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
LRRC40Q9H9A6 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC25.42■■□□□ 1.66
LRRC40Q9H9A6 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
LRRC40Q9H9A6 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC25.42■■□□□ 1.66
LRRC40Q9H9A6 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.42■■□□□ 1.66
LRRC40Q9H9A6 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC25.42■■□□□ 1.66
LRRC40Q9H9A6 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
LRRC40Q9H9A6 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC25.41■■□□□ 1.66
LRRC40Q9H9A6 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC25.41■■□□□ 1.66
LRRC40Q9H9A6 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
LRRC40Q9H9A6 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
LRRC40Q9H9A6 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC25.4■■□□□ 1.66
LRRC40Q9H9A6 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
LRRC40Q9H9A6 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.66
LRRC40Q9H9A6 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC25.39■■□□□ 1.66
LRRC40Q9H9A6 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC25.39■■□□□ 1.66
LRRC40Q9H9A6 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
LRRC40Q9H9A6 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
LRRC40Q9H9A6 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
LRRC40Q9H9A6 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
LRRC40Q9H9A6 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC25.37■■□□□ 1.65
LRRC40Q9H9A6 RPS2-210ENST00000530225 765 ntTSL 2 BASIC25.37■■□□□ 1.65
LRRC40Q9H9A6 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC25.37■■□□□ 1.65
LRRC40Q9H9A6 DUX4L13-201ENST00000554103 1267 ntBASIC25.36■■□□□ 1.65
LRRC40Q9H9A6 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC25.36■■□□□ 1.65
LRRC40Q9H9A6 DUX4L15-201ENST00000611059 1267 ntBASIC25.36■■□□□ 1.65
LRRC40Q9H9A6 DUX4L23-201ENST00000615195 1269 ntBASIC25.36■■□□□ 1.65
LRRC40Q9H9A6 DUX4L24-201ENST00000617576 1269 ntBASIC25.36■■□□□ 1.65
LRRC40Q9H9A6 DUX4L22-201ENST00000618238 1269 ntBASIC25.36■■□□□ 1.65
LRRC40Q9H9A6 DUX4L20-201ENST00000619712 1269 ntBASIC25.36■■□□□ 1.65
LRRC40Q9H9A6 DUX4L21-201ENST00000622058 1269 ntBASIC25.36■■□□□ 1.65
LRRC40Q9H9A6 DUX4L10-201ENST00000622460 1267 ntBASIC25.36■■□□□ 1.65
LRRC40Q9H9A6 DUX4L25-201ENST00000624915 1269 ntBASIC25.36■■□□□ 1.65
LRRC40Q9H9A6 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC25.36■■□□□ 1.65
LRRC40Q9H9A6 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC25.36■■□□□ 1.65
LRRC40Q9H9A6 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
LRRC40Q9H9A6 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
LRRC40Q9H9A6 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
LRRC40Q9H9A6 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
LRRC40Q9H9A6 ZNRF2P2-203ENST00000454624 420 ntBASIC25.34■■□□□ 1.65
LRRC40Q9H9A6 DUX4L11-201ENST00000611504 1267 ntBASIC25.34■■□□□ 1.65
LRRC40Q9H9A6 DUX4L12-201ENST00000614593 1267 ntBASIC25.34■■□□□ 1.65
LRRC40Q9H9A6 DUX4L14-201ENST00000621227 1267 ntBASIC25.34■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms