Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 DUX4L14-201ENST00000621227 1267 ntBASIC20.13■□□□□ 0.81
CX3CL1P78423 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.12■□□□□ 0.81
CX3CL1P78423 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CX3CL1P78423 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CX3CL1P78423 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC20.12■□□□□ 0.81
CX3CL1P78423 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CX3CL1P78423 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.12■□□□□ 0.81
CX3CL1P78423 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.12■□□□□ 0.81
CX3CL1P78423 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CX3CL1P78423 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.11■□□□□ 0.81
CX3CL1P78423 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CX3CL1P78423 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CX3CL1P78423 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.1■□□□□ 0.81
CX3CL1P78423 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CX3CL1P78423 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L13-201ENST00000554103 1267 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L15-201ENST00000611059 1267 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L23-201ENST00000615195 1269 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L24-201ENST00000617576 1269 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L22-201ENST00000618238 1269 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L20-201ENST00000619712 1269 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L21-201ENST00000622058 1269 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L10-201ENST00000622460 1267 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 DUX4L25-201ENST00000624915 1269 ntBASIC20.1■□□□□ 0.81
CX3CL1P78423 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CX3CL1P78423 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
CX3CL1P78423 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CX3CL1P78423 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CX3CL1P78423 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CX3CL1P78423 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CX3CL1P78423 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CX3CL1P78423 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CX3CL1P78423 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CX3CL1P78423 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
CX3CL1P78423 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CX3CL1P78423 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.07■□□□□ 0.8
CX3CL1P78423 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CX3CL1P78423 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CX3CL1P78423 AL121749.1-202ENST00000609313 2153 ntBASIC20.07■□□□□ 0.8
CX3CL1P78423 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.07■□□□□ 0.8
CX3CL1P78423 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CX3CL1P78423 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.07■□□□□ 0.8
CX3CL1P78423 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
CX3CL1P78423 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.06■□□□□ 0.8
CX3CL1P78423 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CX3CL1P78423 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CX3CL1P78423 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
CX3CL1P78423 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CX3CL1P78423 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.06■□□□□ 0.8
CX3CL1P78423 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CX3CL1P78423 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CX3CL1P78423 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CX3CL1P78423 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.05■□□□□ 0.8
CX3CL1P78423 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CX3CL1P78423 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CX3CL1P78423 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CX3CL1P78423 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.05■□□□□ 0.8
CX3CL1P78423 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CX3CL1P78423 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.04■□□□□ 0.8
CX3CL1P78423 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CX3CL1P78423 PEX7-203ENST00000541292 945 ntTSL 5 BASIC20.04■□□□□ 0.8
CX3CL1P78423 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CX3CL1P78423 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CX3CL1P78423 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CX3CL1P78423 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CX3CL1P78423 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CX3CL1P78423 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CX3CL1P78423 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.03■□□□□ 0.8
CX3CL1P78423 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CX3CL1P78423 MIR7108-201ENST00000614319 87 ntBASIC20.03■□□□□ 0.8
CX3CL1P78423 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.02■□□□□ 0.8
CX3CL1P78423 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.02■□□□□ 0.8
CX3CL1P78423 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.02■□□□□ 0.8
CX3CL1P78423 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CX3CL1P78423 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CX3CL1P78423 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CX3CL1P78423 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CX3CL1P78423 BX255925.1-201ENST00000566954 1854 ntBASIC20.01■□□□□ 0.79
CX3CL1P78423 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CX3CL1P78423 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CX3CL1P78423 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CX3CL1P78423 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.01■□□□□ 0.79
CX3CL1P78423 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CX3CL1P78423 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CX3CL1P78423 LINC01003-201ENST00000564834 1764 ntBASIC20■□□□□ 0.79
CX3CL1P78423 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
CX3CL1P78423 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CX3CL1P78423 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CX3CL1P78423 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20■□□□□ 0.79
CX3CL1P78423 AC018358.1-201ENST00000631079 1402 ntBASIC20■□□□□ 0.79
CX3CL1P78423 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CX3CL1P78423 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CX3CL1P78423 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CX3CL1P78423 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CX3CL1P78423 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CX3CL1P78423 HES6-205ENST00000409356 528 ntTSL 2 BASIC19.99■□□□□ 0.79
CX3CL1P78423 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CX3CL1P78423 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
CX3CL1P78423 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CX3CL1P78423 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms