Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A5A8TX70 MIR4508-201ENST00000584178 70 ntBASIC20.2■□□□□ 0.82
COL6A5A8TX70 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A5A8TX70 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A5A8TX70 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A5A8TX70 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.19■□□□□ 0.82
COL6A5A8TX70 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A5A8TX70 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.18■□□□□ 0.82
COL6A5A8TX70 MIR6765-201ENST00000614092 87 ntBASIC20.18■□□□□ 0.82
COL6A5A8TX70 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL6A5A8TX70 AC139795.1-202ENST00000500444 432 ntBASIC20.17■□□□□ 0.82
COL6A5A8TX70 AC239859.2-201ENST00000444165 318 ntBASIC20.17■□□□□ 0.82
COL6A5A8TX70 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
COL6A5A8TX70 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL6A5A8TX70 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL6A5A8TX70 AC092666.2-201ENST00000613287 246 ntBASIC20.16■□□□□ 0.82
COL6A5A8TX70 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.16■□□□□ 0.82
COL6A5A8TX70 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL6A5A8TX70 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.15■□□□□ 0.82
COL6A5A8TX70 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.15■□□□□ 0.82
COL6A5A8TX70 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC20.15■□□□□ 0.82
COL6A5A8TX70 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL6A5A8TX70 MED25-210ENST00000612854 801 ntTSL 5 BASIC20.14■□□□□ 0.82
COL6A5A8TX70 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
COL6A5A8TX70 MED25-214ENST00000622402 642 ntTSL 5 BASIC20.14■□□□□ 0.82
COL6A5A8TX70 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.14■□□□□ 0.81
COL6A5A8TX70 Z92544.1-202ENST00000571933 1220 ntBASIC20.14■□□□□ 0.81
COL6A5A8TX70 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
COL6A5A8TX70 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.13■□□□□ 0.81
COL6A5A8TX70 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.13■□□□□ 0.81
COL6A5A8TX70 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
COL6A5A8TX70 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.13■□□□□ 0.81
COL6A5A8TX70 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL6A5A8TX70 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL6A5A8TX70 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.12■□□□□ 0.81
COL6A5A8TX70 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
COL6A5A8TX70 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
COL6A5A8TX70 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL6A5A8TX70 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.12■□□□□ 0.81
COL6A5A8TX70 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
COL6A5A8TX70 AC110285.7-201ENST00000624417 1536 ntBASIC20.12■□□□□ 0.81
COL6A5A8TX70 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL6A5A8TX70 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL6A5A8TX70 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
COL6A5A8TX70 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL6A5A8TX70 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.11■□□□□ 0.81
COL6A5A8TX70 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL6A5A8TX70 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
COL6A5A8TX70 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.11■□□□□ 0.81
COL6A5A8TX70 WHAMMP2-203ENST00000563942 1603 ntBASIC20.1■□□□□ 0.81
COL6A5A8TX70 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC20.1■□□□□ 0.81
COL6A5A8TX70 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL6A5A8TX70 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.09■□□□□ 0.81
COL6A5A8TX70 PVT1_1.1-201ENST00000615125 194 ntBASIC20.09■□□□□ 0.81
COL6A5A8TX70 AC126177.7-201ENST00000547904 679 ntBASIC20.07■□□□□ 0.8
COL6A5A8TX70 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.07■□□□□ 0.8
COL6A5A8TX70 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL6A5A8TX70 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL6A5A8TX70 AL031848.2-201ENST00000607670 837 ntBASIC20.07■□□□□ 0.8
COL6A5A8TX70 AC135983.2-203ENST00000454486 1613 ntBASIC20.07■□□□□ 0.8
COL6A5A8TX70 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL6A5A8TX70 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.06■□□□□ 0.8
COL6A5A8TX70 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.06■□□□□ 0.8
COL6A5A8TX70 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A5A8TX70 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A5A8TX70 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.06■□□□□ 0.8
COL6A5A8TX70 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
COL6A5A8TX70 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A5A8TX70 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A5A8TX70 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A5A8TX70 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL6A5A8TX70 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
COL6A5A8TX70 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
COL6A5A8TX70 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A5A8TX70 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.05■□□□□ 0.8
COL6A5A8TX70 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
COL6A5A8TX70 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.05■□□□□ 0.8
COL6A5A8TX70 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A5A8TX70 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A5A8TX70 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL6A5A8TX70 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC20.04■□□□□ 0.8
COL6A5A8TX70 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A5A8TX70 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A5A8TX70 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
COL6A5A8TX70 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
COL6A5A8TX70 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL6A5A8TX70 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.04■□□□□ 0.8
COL6A5A8TX70 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.04■□□□□ 0.8
COL6A5A8TX70 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A5A8TX70 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A5A8TX70 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A5A8TX70 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL6A5A8TX70 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC20.03■□□□□ 0.8
COL6A5A8TX70 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.03■□□□□ 0.8
COL6A5A8TX70 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
COL6A5A8TX70 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.02■□□□□ 0.8
COL6A5A8TX70 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
COL6A5A8TX70 AL139246.5-201ENST00000606645 996 ntBASIC20.02■□□□□ 0.8
COL6A5A8TX70 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL6A5A8TX70 AC093536.1-201ENST00000569153 554 ntBASIC20.02■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms