RNA–Protein interactions for RNA: YLR221C

RSA3, Transcript of Protein with a likely role in ribosomal maturation, yeast

Gene RSA3, Length 663 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RSA3	YLR221C	MTC1	P47018	478 aa	Known RBP	19.39	■□□□□ 0.69
RSA3	YLR221C	DRS1	P32892	752 aa	Known RBP	18.09	■□□□□ 0.49
RSA3	YLR221C	FAP1	P53971	965 aa		17.52	■□□□□ 0.4
RSA3	YLR221C	PRY3	P47033	881 aa		16.47	■□□□□ 0.23
RSA3	YLR221C	PRI1	P10363	409 aa		16.36	■□□□□ 0.21
RSA3	YLR221C	AAD16	Q02895	342 aa		16.26	■□□□□ 0.19
RSA3	YLR221C	ISW2	Q08773	1120 aa		16.08	■□□□□ 0.16
RSA3	YLR221C	RPG1	P38249	964 aa	Known RBP	15.92	■□□□□ 0.14
RSA3	YLR221C	DIP2	Q12220	943 aa	Predicted RBP	15.87	■□□□□ 0.13
RSA3	YLR221C	YCK3	P39962	524 aa		15.51	■□□□□ 0.07
RSA3	YLR221C	TSR3	Q12094	313 aa	Known RBP	15.49	■□□□□ 0.07
RSA3	YLR221C	HAA1	Q12753	694 aa	Known RBP	15.41	■□□□□ 0.06
RSA3	YLR221C	RSE1	Q04693	1361 aa	Known RBP	15.35	■□□□□ 0.05
RSA3	YLR221C	AVT3	P36062	692 aa		15.27	■□□□□ 0.04
RSA3	YLR221C	BFR2	Q06631	534 aa	Known RBP	15.03	■□□□□ -0
RSA3	YLR221C	RPL17A	P05740	184 aa	Known RBP	14.88	□□□□□ -0.03
RSA3	YLR221C	RPL17B	P46990	184 aa	Known RBP	14.88	□□□□□ -0.03
RSA3	YLR221C	MRPL32	P25348	183 aa		14.87	□□□□□ -0.03
RSA3	YLR221C	REB1	P21538	810 aa		14.82	□□□□□ -0.04
RSA3	YLR221C	YGL015C	P33199	130 aa		14.25	□□□□□ -0.13
RSA3	YLR221C	SPT21	P35209	758 aa		14.21	□□□□□ -0.13
RSA3	YLR221C	CDC27	P38042	758 aa		14.12	□□□□□ -0.15
RSA3	YLR221C	YKR023W	P36119	530 aa	Known RBP	14.07	□□□□□ -0.16
RSA3	YLR221C	TFA1	P36100	482 aa		13.83	□□□□□ -0.2
RSA3	YLR221C	HO	P09932	586 aa		13.8	□□□□□ -0.2
RSA3	YLR221C	TFC8	Q12308	588 aa		13.78	□□□□□ -0.2
RSA3	YLR221C	DCD1	P06773	312 aa		13.75	□□□□□ -0.21
RSA3	YLR221C	UBP10	P53874	792 aa	Predicted RBP	13.71	□□□□□ -0.21
RSA3	YLR221C	RIM101	P33400	625 aa		13.7	□□□□□ -0.22
RSA3	YLR221C	MAP2	P38174	421 aa	Known RBP	13.69	□□□□□ -0.22
RSA3	YLR221C	SCY1	P53009	804 aa		13.42	□□□□□ -0.26
RSA3	YLR221C	BCH2	P36122	765 aa		13.33	□□□□□ -0.28
RSA3	YLR221C	OXP1	P28273	1286 aa		13.24	□□□□□ -0.29
RSA3	YLR221C	SLX5	P32828	619 aa	Known RBP	13.24	□□□□□ -0.29
RSA3	YLR221C	TIF4632	P39936	914 aa	Known RBP	13.17	□□□□□ -0.3
RSA3	YLR221C	PTP3	P40048	928 aa		13.08	□□□□□ -0.32
RSA3	YLR221C	TGL3	P40308	642 aa		13.08	□□□□□ -0.32
RSA3	YLR221C	BUD31	P25337	157 aa	Predicted RBP	13.07	□□□□□ -0.32
RSA3	YLR221C	YIL055C	P40523	627 aa	Known RBP	13.07	□□□□□ -0.32
RSA3	YLR221C	EPS1	P40557	701 aa		13	□□□□□ -0.33
RSA3	YLR221C	BDF1	P35817	686 aa		12.94	□□□□□ -0.34
RSA3	YLR221C	YAH1	Q12184	172 aa	Known RBP	12.9	□□□□□ -0.34
RSA3	YLR221C	RSM7	P47150	247 aa		12.86	□□□□□ -0.35
RSA3	YLR221C	BBC1	P47068	1157 aa		12.77	□□□□□ -0.37
RSA3	YLR221C	AI2	P03876	854 aa		12.75	□□□□□ -0.37
RSA3	YLR221C	UBP9	P39967	754 aa		12.7	□□□□□ -0.38
RSA3	YLR221C	YLR271W	Q06152	274 aa		12.64	□□□□□ -0.39
RSA3	YLR221C	MST1	P07236	462 aa		12.51	□□□□□ -0.41
RSA3	YLR221C	YOR238W	Q08634	303 aa		12.51	□□□□□ -0.41
RSA3	YLR221C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	12.49	□□□□□ -0.41	not detected
RSA3	YLR221C	SIS1	P25294	352 aa	Known RBP	12.47	□□□□□ -0.41
RSA3	YLR221C	SSP1	P38871	571 aa		12.47	□□□□□ -0.41
RSA3	YLR221C	PSD2	P53037	1138 aa	Known RBP	12.46	□□□□□ -0.41
RSA3	YLR221C	YAP5	P40574	245 aa		12.42	□□□□□ -0.42
RSA3	YLR221C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	12.42	□□□□□ -0.42	not detected
RSA3	YLR221C	YBL029C-A	Q3E756	94 aa		12.37	□□□□□ -0.43
RSA3	YLR221C	MRM1	P25270	412 aa		12.31	□□□□□ -0.44
RSA3	YLR221C	RQC2	Q12532	1038 aa	Known RBP	12.31	□□□□□ -0.44
RSA3	YLR221C	VNX1	P42839	908 aa		12.21	□□□□□ -0.45
RSA3	YLR221C	CST9	Q06032	482 aa		12.2	□□□□□ -0.46
RSA3	YLR221C	WSC3	Q12215	556 aa		12.2	□□□□□ -0.46
RSA3	YLR221C	MGA2	P40578	1113 aa		12.18	□□□□□ -0.46
RSA3	YLR221C	GTT3	P39996	337 aa		12.17	□□□□□ -0.46
RSA3	YLR221C	PIB1	Q06651	286 aa		12.16	□□□□□ -0.46
RSA3	YLR221C	SPP1	Q03012	353 aa		12.12	□□□□□ -0.47
RSA3	YLR221C	RTG3	P38165	486 aa		12.02	□□□□□ -0.49
RSA3	YLR221C	VPS29	P38759	282 aa		12.01	□□□□□ -0.49
RSA3	YLR221C	TIF11	P38912	153 aa	Known RBP	12	□□□□□ -0.49
RSA3	YLR221C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	12	□□□□□ -0.49	not detected
RSA3	YLR221C	DBP1	P24784	617 aa	Known RBP	11.95	□□□□□ -0.5
RSA3	YLR221C	YFR006W	P43590	535 aa		11.94	□□□□□ -0.5
RSA3	YLR221C	RCR1	P38212	213 aa		11.92	□□□□□ -0.5
RSA3	YLR221C	STS1	P38637	319 aa		11.89	□□□□□ -0.51
RSA3	YLR221C	ULI1	P43604	169 aa		11.88	□□□□□ -0.51
RSA3	YLR221C	MSB4	Q12317	492 aa		11.84	□□□□□ -0.51
RSA3	YLR221C	FKH1	P40466	484 aa		11.83	□□□□□ -0.52
RSA3	YLR221C	LDB19	Q12502	818 aa		11.83	□□□□□ -0.52
RSA3	YLR221C	YOL036W	Q08206	761 aa		11.82	□□□□□ -0.52
RSA3	YLR221C	VMA1	P17255	1071 aa	Known RBP	11.81	□□□□□ -0.52
RSA3	YLR221C	SET4	P42948	560 aa		11.81	□□□□□ -0.52
RSA3	YLR221C	IOC2	Q12072	812 aa		11.81	□□□□□ -0.52
RSA3	YLR221C	AIR2	Q12476	344 aa	Known RBP	11.81	□□□□□ -0.52
RSA3	YLR221C	EAP1	P36041	632 aa	Known RBP	11.77	□□□□□ -0.53
RSA3	YLR221C	YJL171C	P46992	396 aa		11.73	□□□□□ -0.53
RSA3	YLR221C	SAM3	Q08986	587 aa		11.73	□□□□□ -0.53
RSA3	YLR221C	TRP5	P00931	707 aa	Known RBP	11.7	□□□□□ -0.54
RSA3	YLR221C	RTG1	P32607	177 aa		11.63	□□□□□ -0.55
RSA3	YLR221C	BMT6	Q12291	365 aa		11.58	□□□□□ -0.56
RSA3	YLR221C	GYP5	Q12344	894 aa		11.58	□□□□□ -0.56
RSA3	YLR221C	YNL035C	P53962	389 aa	Known RBP	11.57	□□□□□ -0.56
RSA3	YLR221C	RAM2	P29703	316 aa		11.56	□□□□□ -0.56
RSA3	YLR221C	ABP1	P15891	592 aa	Known RBP	11.54	□□□□□ -0.56
RSA3	YLR221C	DMA1	P38823	416 aa		11.53	□□□□□ -0.56
RSA3	YLR221C	NCR1	Q12200	1170 aa		11.53	□□□□□ -0.56
RSA3	YLR221C	MAK11	P20484	414 aa	Known RBP	11.51	□□□□□ -0.57
RSA3	YLR221C	SEC61	P32915	480 aa		11.51	□□□□□ -0.57
RSA3	YLR221C	DCW1	P36091	449 aa		11.5	□□□□□ -0.57
RSA3	YLR221C	HTA1	P04911	132 aa	Known RBP	11.48	□□□□□ -0.57
RSA3	YLR221C	HTA2	P04912	132 aa		11.48	□□□□□ -0.57
RSA3	YLR221C	MIF2	P35201	549 aa		11.47	□□□□□ -0.57

Retrieved 100 of 5,963 RNA–protein pairs in 11.3 ms