RNA–Protein interactions for RNA: YLR086W

SMC4, Transcript of Subunit of the condensin complex, yeast

Gene SMC4, Length 4,257 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMC4	YLR086W	DRS1	P32892	752 aa	Known RBP	3.86	□□□□□ -1.79
SMC4	YLR086W	MTC1	P47018	478 aa	Known RBP	3.82	□□□□□ -1.8
SMC4	YLR086W	TFA1	P36100	482 aa		3.4	□□□□□ -1.87
SMC4	YLR086W	BFR2	Q06631	534 aa	Known RBP	3.39	□□□□□ -1.87
SMC4	YLR086W	AVT3	P36062	692 aa		3.35	□□□□□ -1.87
SMC4	YLR086W	FAP1	P53971	965 aa		3.3	□□□□□ -1.88
SMC4	YLR086W	DIP2	Q12220	943 aa	Predicted RBP	3.29	□□□□□ -1.88
SMC4	YLR086W	RSE1	Q04693	1361 aa	Known RBP	3.09	□□□□□ -1.91
SMC4	YLR086W	ISW2	Q08773	1120 aa		3.07	□□□□□ -1.92
SMC4	YLR086W	PRY3	P47033	881 aa		3.06	□□□□□ -1.92
SMC4	YLR086W	PRI1	P10363	409 aa		3.03	□□□□□ -1.92
SMC4	YLR086W	DCD1	P06773	312 aa		3.02	□□□□□ -1.93
SMC4	YLR086W	RQC2	Q12532	1038 aa	Known RBP	3	□□□□□ -1.93
SMC4	YLR086W	PTP3	P40048	928 aa		2.99	□□□□□ -1.93
SMC4	YLR086W	RPG1	P38249	964 aa	Known RBP	2.98	□□□□□ -1.93
SMC4	YLR086W	TSR3	Q12094	313 aa	Known RBP	2.95	□□□□□ -1.94
SMC4	YLR086W	AAD16	Q02895	342 aa		2.93	□□□□□ -1.94
SMC4	YLR086W	YAH1	Q12184	172 aa	Known RBP	2.93	□□□□□ -1.94
SMC4	YLR086W	RIM101	P33400	625 aa		2.93	□□□□□ -1.94
SMC4	YLR086W	SPT21	P35209	758 aa		2.93	□□□□□ -1.94
SMC4	YLR086W	RPL17A	P05740	184 aa	Known RBP	2.91	□□□□□ -1.94
SMC4	YLR086W	RPL17B	P46990	184 aa	Known RBP	2.91	□□□□□ -1.94
SMC4	YLR086W	REB1	P21538	810 aa		2.85	□□□□□ -1.95
SMC4	YLR086W	HO	P09932	586 aa		2.82	□□□□□ -1.96
SMC4	YLR086W	SSP1	P38871	571 aa		2.79	□□□□□ -1.96
SMC4	YLR086W	OXP1	P28273	1286 aa		2.78	□□□□□ -1.96
SMC4	YLR086W	YKR023W	P36119	530 aa	Known RBP	2.77	□□□□□ -1.97
SMC4	YLR086W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	2.74	□□□□□ -1.97	not detected
SMC4	YLR086W	SAS10	Q12136	610 aa	Predicted RBP	2.73	□□□□□ -1.97
SMC4	YLR086W	DMA1	P38823	416 aa		2.73	□□□□□ -1.97
SMC4	YLR086W	PIB1	Q06651	286 aa		2.73	□□□□□ -1.97
SMC4	YLR086W	YLR271W	Q06152	274 aa		2.72	□□□□□ -1.97
SMC4	YLR086W	TFC8	Q12308	588 aa		2.72	□□□□□ -1.97
SMC4	YLR086W	MRPL32	P25348	183 aa		2.71	□□□□□ -1.97
SMC4	YLR086W	LEO1	P38439	464 aa		2.71	□□□□□ -1.98
SMC4	YLR086W	MGA2	P40578	1113 aa		2.71	□□□□□ -1.98
SMC4	YLR086W	RSM7	P47150	247 aa		2.7	□□□□□ -1.98
SMC4	YLR086W	YIL055C	P40523	627 aa	Known RBP	2.69	□□□□□ -1.98
SMC4	YLR086W	PSD2	P53037	1138 aa	Known RBP	2.68	□□□□□ -1.98
SMC4	YLR086W	LEU3	P08638	886 aa		2.68	□□□□□ -1.98
SMC4	YLR086W	HAA1	Q12753	694 aa	Known RBP	2.67	□□□□□ -1.98
SMC4	YLR086W	YCK3	P39962	524 aa		2.66	□□□□□ -1.98
SMC4	YLR086W	TAF7	Q05021	590 aa		2.65	□□□□□ -1.98
SMC4	YLR086W	CDC27	P38042	758 aa		2.64	□□□□□ -1.99
SMC4	YLR086W	NOP53	Q12080	455 aa	Known RBP	2.64	□□□□□ -1.99
SMC4	YLR086W	YPR148C	Q06523	435 aa		2.64	□□□□□ -1.99
SMC4	YLR086W	AI2	P03876	854 aa		2.63	□□□□□ -1.99
SMC4	YLR086W	UBP10	P53874	792 aa	Predicted RBP	2.62	□□□□□ -1.99
SMC4	YLR086W	BCH2	P36122	765 aa		2.62	□□□□□ -1.99
SMC4	YLR086W	IFH1	P39520	1085 aa		2.62	□□□□□ -1.99
SMC4	YLR086W	BBC1	P47068	1157 aa		2.62	□□□□□ -1.99
SMC4	YLR086W	CST9	Q06032	482 aa		2.6	□□□□□ -1.99
SMC4	YLR086W	CKB1	P43639	278 aa		2.59	□□□□□ -1.99
SMC4	YLR086W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	2.59	□□□□□ -2	not detected
SMC4	YLR086W	EPS1	P40557	701 aa		2.59	□□□□□ -2
SMC4	YLR086W	RAM2	P29703	316 aa		2.58	□□□□□ -2
SMC4	YLR086W	MAK11	P20484	414 aa	Known RBP	2.57	□□□□□ -2
SMC4	YLR086W	BDF1	P35817	686 aa		2.57	□□□□□ -2
SMC4	YLR086W	RTG3	P38165	486 aa		2.56	□□□□□ -2
SMC4	YLR086W	RCR1	P38212	213 aa		2.56	□□□□□ -2
SMC4	YLR086W	RPN1	P38764	993 aa	Known RBP	2.56	□□□□□ -2
SMC4	YLR086W	YGL015C	P33199	130 aa		2.55	□□□□□ -2
SMC4	YLR086W	SET1	P38827	1080 aa	Known RBP	2.55	□□□□□ -2
SMC4	YLR086W	DSF2	P38213	736 aa		2.54	□□□□□ -2
SMC4	YLR086W	VPS29	P38759	282 aa		2.54	□□□□□ -2
SMC4	YLR086W	YFR006W	P43590	535 aa		2.52	□□□□□ -2.01
SMC4	YLR086W	SCY1	P53009	804 aa		2.52	□□□□□ -2.01
SMC4	YLR086W	MRM1	P25270	412 aa		2.52	□□□□□ -2.01
SMC4	YLR086W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	2.51	□□□□□ -2.01	not detected
SMC4	YLR086W	MAK21	Q12176	1025 aa	Known RBP	2.51	□□□□□ -2.01
SMC4	YLR086W	TGL3	P40308	642 aa		2.51	□□□□□ -2.01
SMC4	YLR086W	MAP2	P38174	421 aa	Known RBP	2.51	□□□□□ -2.01
SMC4	YLR086W	YNR021W	P53723	404 aa	Known RBP	2.5	□□□□□ -2.01
SMC4	YLR086W	AIM7	Q12156	149 aa		2.5	□□□□□ -2.01
SMC4	YLR086W	MST1	P07236	462 aa		2.5	□□□□□ -2.01
SMC4	YLR086W	SLX5	P32828	619 aa	Known RBP	2.5	□□□□□ -2.01
SMC4	YLR086W	COQ8	P27697	501 aa		2.49	□□□□□ -2.01
SMC4	YLR086W	REF2	P42073	533 aa	Predicted RBP	2.48	□□□□□ -2.01
SMC4	YLR086W	SAM3	Q08986	587 aa		2.48	□□□□□ -2.01
SMC4	YLR086W	COX6	P00427	148 aa		2.47	□□□□□ -2.01
SMC4	YLR086W	PBS2	P08018	668 aa		2.47	□□□□□ -2.01
SMC4	YLR086W	VPS70	P47161	811 aa		2.47	□□□□□ -2.01
SMC4	YLR086W	STS1	P38637	319 aa		2.46	□□□□□ -2.02
SMC4	YLR086W	TIF4632	P39936	914 aa	Known RBP	2.46	□□□□□ -2.02
SMC4	YLR086W	ABP1	P15891	592 aa	Known RBP	2.46	□□□□□ -2.02
SMC4	YLR086W	EDS1	P38073	919 aa		2.46	□□□□□ -2.02
SMC4	YLR086W	YAP5	P40574	245 aa		2.45	□□□□□ -2.02
SMC4	YLR086W	NUP42	P49686	430 aa	Known RBP	2.45	□□□□□ -2.02
SMC4	YLR086W	SPB4	P25808	606 aa	Predicted RBP	2.45	□□□□□ -2.02
SMC4	YLR086W	PTC3	P34221	468 aa	Known RBP	2.45	□□□□□ -2.02
SMC4	YLR086W	MAM3	Q12296	706 aa		2.44	□□□□□ -2.02
SMC4	YLR086W	DBP1	P24784	617 aa	Known RBP	2.44	□□□□□ -2.02
SMC4	YLR086W	NST1	P53935	1240 aa		2.44	□□□□□ -2.02
SMC4	YLR086W	HPC2	Q01448	625 aa		2.44	□□□□□ -2.02
SMC4	YLR086W	YOR238W	Q08634	303 aa		2.44	□□□□□ -2.02
SMC4	YLR086W	GUT1	P32190	709 aa		2.43	□□□□□ -2.02
SMC4	YLR086W	MIF2	P35201	549 aa		2.43	□□□□□ -2.02
SMC4	YLR086W	VMA1	P17255	1071 aa	Known RBP	2.43	□□□□□ -2.02
SMC4	YLR086W	YDR090C	Q03193	310 aa		2.43	□□□□□ -2.02
SMC4	YLR086W	RLF2	Q12495	606 aa		2.43	□□□□□ -2.02

Retrieved 100 of 5,963 RNA–protein pairs in 7.7 ms