RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	MTC1	P47018	478 aa	Known RBP	11.85	□□□□□ -0.51
VMA22	YHR060W	DRS1	P32892	752 aa	Known RBP	11.69	□□□□□ -0.54
VMA22	YHR060W	BFR2	Q06631	534 aa	Known RBP	10.03	□□□□□ -0.8
VMA22	YHR060W	DIP2	Q12220	943 aa	Predicted RBP	10.02	□□□□□ -0.81
VMA22	YHR060W	FAP1	P53971	965 aa		9.96	□□□□□ -0.82
VMA22	YHR060W	AVT3	P36062	692 aa		9.82	□□□□□ -0.84
VMA22	YHR060W	ISW2	Q08773	1120 aa		9.74	□□□□□ -0.85
VMA22	YHR060W	PRI1	P10363	409 aa		9.63	□□□□□ -0.87
VMA22	YHR060W	RPG1	P38249	964 aa	Known RBP	9.56	□□□□□ -0.88
VMA22	YHR060W	RSE1	Q04693	1361 aa	Known RBP	9.55	□□□□□ -0.88
VMA22	YHR060W	AAD16	Q02895	342 aa		9.51	□□□□□ -0.89
VMA22	YHR060W	PRY3	P47033	881 aa		9.36	□□□□□ -0.91
VMA22	YHR060W	TFA1	P36100	482 aa		9.35	□□□□□ -0.91
VMA22	YHR060W	RPL17A	P05740	184 aa	Known RBP	9.17	□□□□□ -0.94
VMA22	YHR060W	RPL17B	P46990	184 aa	Known RBP	9.17	□□□□□ -0.94
VMA22	YHR060W	REB1	P21538	810 aa		9.11	□□□□□ -0.95
VMA22	YHR060W	TSR3	Q12094	313 aa	Known RBP	9.1	□□□□□ -0.95
VMA22	YHR060W	RQC2	Q12532	1038 aa	Known RBP	8.98	□□□□□ -0.97
VMA22	YHR060W	YCK3	P39962	524 aa		8.89	□□□□□ -0.99
VMA22	YHR060W	HAA1	Q12753	694 aa	Known RBP	8.84	□□□□□ -0.99
VMA22	YHR060W	MRPL32	P25348	183 aa		8.83	□□□□□ -1
VMA22	YHR060W	SPT21	P35209	758 aa		8.78	□□□□□ -1
VMA22	YHR060W	RIM101	P33400	625 aa		8.66	□□□□□ -1.02
VMA22	YHR060W	YKR023W	P36119	530 aa	Known RBP	8.54	□□□□□ -1.04
VMA22	YHR060W	TFC8	Q12308	588 aa		8.4	□□□□□ -1.06
VMA22	YHR060W	CDC27	P38042	758 aa		8.39	□□□□□ -1.07
VMA22	YHR060W	HO	P09932	586 aa		8.36	□□□□□ -1.07
VMA22	YHR060W	OXP1	P28273	1286 aa		8.34	□□□□□ -1.07
VMA22	YHR060W	YIL055C	P40523	627 aa	Known RBP	8.32	□□□□□ -1.08
VMA22	YHR060W	YGL015C	P33199	130 aa		8.31	□□□□□ -1.08
VMA22	YHR060W	DCD1	P06773	312 aa		8.26	□□□□□ -1.09
VMA22	YHR060W	PTP3	P40048	928 aa		8.24	□□□□□ -1.09
VMA22	YHR060W	SSP1	P38871	571 aa		8.2	□□□□□ -1.1
VMA22	YHR060W	YAH1	Q12184	172 aa	Known RBP	8.2	□□□□□ -1.1
VMA22	YHR060W	UBP10	P53874	792 aa	Predicted RBP	8.19	□□□□□ -1.1
VMA22	YHR060W	TAF7	Q05021	590 aa		8.18	□□□□□ -1.1
VMA22	YHR060W	RSM7	P47150	247 aa		8.16	□□□□□ -1.1
VMA22	YHR060W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	8.15	□□□□□ -1.1	not detected
VMA22	YHR060W	BCH2	P36122	765 aa		8.13	□□□□□ -1.11
VMA22	YHR060W	YLR271W	Q06152	274 aa		8.09	□□□□□ -1.11
VMA22	YHR060W	MAP2	P38174	421 aa	Known RBP	8.08	□□□□□ -1.12
VMA22	YHR060W	SCY1	P53009	804 aa		8.05	□□□□□ -1.12
VMA22	YHR060W	BBC1	P47068	1157 aa		8.04	□□□□□ -1.12
VMA22	YHR060W	AI2	P03876	854 aa		8.02	□□□□□ -1.13
VMA22	YHR060W	EPS1	P40557	701 aa		7.99	□□□□□ -1.13
VMA22	YHR060W	SLX5	P32828	619 aa	Known RBP	7.96	□□□□□ -1.14
VMA22	YHR060W	DMA1	P38823	416 aa		7.96	□□□□□ -1.14
VMA22	YHR060W	MGA2	P40578	1113 aa		7.95	□□□□□ -1.14
VMA22	YHR060W	BDF1	P35817	686 aa		7.94	□□□□□ -1.14
VMA22	YHR060W	PSD2	P53037	1138 aa	Known RBP	7.91	□□□□□ -1.14
VMA22	YHR060W	TIF4632	P39936	914 aa	Known RBP	7.88	□□□□□ -1.15
VMA22	YHR060W	CST9	Q06032	482 aa		7.81	□□□□□ -1.16
VMA22	YHR060W	TGL3	P40308	642 aa		7.8	□□□□□ -1.16
VMA22	YHR060W	LEO1	P38439	464 aa		7.77	□□□□□ -1.17
VMA22	YHR060W	MRM1	P25270	412 aa		7.75	□□□□□ -1.17
VMA22	YHR060W	RTG3	P38165	486 aa		7.68	□□□□□ -1.18
VMA22	YHR060W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	7.66	□□□□□ -1.18	not detected
VMA22	YHR060W	BUD31	P25337	157 aa	Predicted RBP	7.65	□□□□□ -1.18
VMA22	YHR060W	YAP5	P40574	245 aa		7.6	□□□□□ -1.19
VMA22	YHR060W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	7.57	□□□□□ -1.2	RIP-Chip
VMA22	YHR060W	YOR238W	Q08634	303 aa		7.57	□□□□□ -1.2
VMA22	YHR060W	VPS29	P38759	282 aa		7.55	□□□□□ -1.2
VMA22	YHR060W	RCR1	P38212	213 aa		7.54	□□□□□ -1.2
VMA22	YHR060W	MST1	P07236	462 aa		7.52	□□□□□ -1.21
VMA22	YHR060W	RAM2	P29703	316 aa		7.52	□□□□□ -1.21
VMA22	YHR060W	MAK11	P20484	414 aa	Known RBP	7.49	□□□□□ -1.21
VMA22	YHR060W	DBP1	P24784	617 aa	Known RBP	7.49	□□□□□ -1.21
VMA22	YHR060W	STS1	P38637	319 aa		7.44	□□□□□ -1.22
VMA22	YHR060W	LEU3	P08638	886 aa		7.43	□□□□□ -1.22
VMA22	YHR060W	GTT3	P39996	337 aa		7.43	□□□□□ -1.22
VMA22	YHR060W	UBP9	P39967	754 aa		7.42	□□□□□ -1.22
VMA22	YHR060W	YFR006W	P43590	535 aa		7.42	□□□□□ -1.22
VMA22	YHR060W	PIB1	Q06651	286 aa		7.41	□□□□□ -1.22
VMA22	YHR060W	NOP53	Q12080	455 aa	Known RBP	7.37	□□□□□ -1.23
VMA22	YHR060W	VMA1	P17255	1071 aa	Known RBP	7.36	□□□□□ -1.23
VMA22	YHR060W	SET1	P38827	1080 aa	Known RBP	7.36	□□□□□ -1.23
VMA22	YHR060W	COQ8	P27697	501 aa		7.35	□□□□□ -1.23
VMA22	YHR060W	MIF2	P35201	549 aa		7.35	□□□□□ -1.23
VMA22	YHR060W	IFH1	P39520	1085 aa		7.33	□□□□□ -1.24
VMA22	YHR060W	SAS10	Q12136	610 aa	Predicted RBP	7.33	□□□□□ -1.24
VMA22	YHR060W	SAM3	Q08986	587 aa		7.31	□□□□□ -1.24
VMA22	YHR060W	MSB4	Q12317	492 aa		7.29	□□□□□ -1.24
VMA22	YHR060W	ABP1	P15891	592 aa	Known RBP	7.27	□□□□□ -1.25
VMA22	YHR060W	PTC3	P34221	468 aa	Known RBP	7.27	□□□□□ -1.25
VMA22	YHR060W	EDS1	P38073	919 aa		7.27	□□□□□ -1.25
VMA22	YHR060W	WSC3	Q12215	556 aa		7.27	□□□□□ -1.25
VMA22	YHR060W	VNX1	P42839	908 aa		7.25	□□□□□ -1.25
VMA22	YHR060W	YOL036W	Q08206	761 aa		7.25	□□□□□ -1.25
VMA22	YHR060W	GYP5	Q12344	894 aa		7.25	□□□□□ -1.25
VMA22	YHR060W	YBL029C-A	Q3E756	94 aa		7.25	□□□□□ -1.25
VMA22	YHR060W	EAP1	P36041	632 aa	Known RBP	7.24	□□□□□ -1.25
VMA22	YHR060W	GRE2	Q12068	342 aa	Known RBP	7.24	□□□□□ -1.25
VMA22	YHR060W	ATH1	P48016	1211 aa		7.23	□□□□□ -1.25
VMA22	YHR060W	YPR148C	Q06523	435 aa		7.23	□□□□□ -1.25
VMA22	YHR060W	GUT1	P32190	709 aa		7.22	□□□□□ -1.25
VMA22	YHR060W	SET4	P42948	560 aa		7.22	□□□□□ -1.25
VMA22	YHR060W	SPP1	Q03012	353 aa		7.21	□□□□□ -1.26
VMA22	YHR060W	RPN1	P38764	993 aa	Known RBP	7.2	□□□□□ -1.26
VMA22	YHR060W	TIF11	P38912	153 aa	Known RBP	7.2	□□□□□ -1.26
VMA22	YHR060W	SIS1	P25294	352 aa	Known RBP	7.19	□□□□□ -1.26

Retrieved 100 of 5,963 RNA–protein pairs in 14.2 ms