RNA–Protein interactions for RNA: YER118C

SHO1, Transcript of Transmembrane osmosensor for filamentous growth and HOG pathways, yeastyeast

Gene SHO1, Length 1,104 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHO1YER118C DRS1P32892 752 aaKnown RBP14.3□□□□□ -0.12
SHO1YER118C TFA1P36100 482 aa13.23□□□□□ -0.29
SHO1YER118C BFR2Q06631 534 aaKnown RBP13□□□□□ -0.33
SHO1YER118C MTC1P47018 478 aaKnown RBP12.82□□□□□ -0.36
SHO1YER118C RQC2Q12532 1038 aaKnown RBP12.69□□□□□ -0.38
SHO1YER118C TAF7Q05021 590 aa12.12□□□□□ -0.47
SHO1YER118C AVT3P36062 692 aa11.95□□□□□ -0.5
SHO1YER118C DIP2Q12220 943 aaPredicted RBP11.69□□□□□ -0.54
SHO1YER118C DMA1P38823 416 aa11.43□□□□□ -0.58
SHO1YER118C LEO1P38439 464 aa11.2□□□□□ -0.62
SHO1YER118C FAP1P53971 965 aa10.85□□□□□ -0.67
SHO1YER118C RSE1Q04693 1361 aaKnown RBP10.65□□□□□ -0.71
SHO1YER118C PTP3P40048 928 aa10.61□□□□□ -0.71
SHO1YER118C LEU3P08638 886 aa10.59□□□□□ -0.71
SHO1YER118C PRI1P10363 409 aa10.48□□□□□ -0.73
SHO1YER118C ISW2Q08773 1120 aa10.46□□□□□ -0.73
SHO1YER118C SAS10Q12136 610 aaPredicted RBP10.39□□□□□ -0.75
SHO1YER118C AAD16Q02895 342 aa10.35□□□□□ -0.75
SHO1YER118C RPG1P38249 964 aaKnown RBP10.32□□□□□ -0.76
SHO1YER118C DMA2P53924 522 aa10.3□□□□□ -0.76
SHO1YER118C SSP1P38871 571 aa10.26□□□□□ -0.77
SHO1YER118C PRY3P47033 881 aa10.19□□□□□ -0.78
SHO1YER118C RPN1P38764 993 aaKnown RBP10.17□□□□□ -0.78
SHO1YER118C RPL17AP05740 184 aaKnown RBP10.16□□□□□ -0.78
SHO1YER118C RPL17BP46990 184 aaKnown RBP10.16□□□□□ -0.78
SHO1YER118C ABP1P15891 592 aaKnown RBP10.14□□□□□ -0.79
SHO1YER118C RLF2Q12495 606 aa10.13□□□□□ -0.79
SHO1YER118C RIM101P33400 625 aa10.09□□□□□ -0.79
SHO1YER118C IFH1P39520 1085 aa10.02□□□□□ -0.81
SHO1YER118C AIM44Q99299 758 aa9.98□□□□□ -0.81
SHO1YER118C ARP8Q12386 881 aaKnown RBP RIP-Chip data9.94□□□□□ -0.82not detected
SHO1YER118C SPT21P35209 758 aa9.92□□□□□ -0.82
SHO1YER118C CKB1P43639 278 aa9.91□□□□□ -0.82
SHO1YER118C TSR3Q12094 313 aaKnown RBP9.91□□□□□ -0.82
SHO1YER118C REB1P21538 810 aa9.88□□□□□ -0.83
SHO1YER118C NAP1P25293 417 aaKnown RBP9.86□□□□□ -0.83
SHO1YER118C YAH1Q12184 172 aaKnown RBP9.84□□□□□ -0.83
SHO1YER118C OXP1P28273 1286 aa9.83□□□□□ -0.84
SHO1YER118C YLR271WQ06152 274 aa9.79□□□□□ -0.84
SHO1YER118C SPB4P25808 606 aaPredicted RBP9.75□□□□□ -0.85
SHO1YER118C MGA2P40578 1113 aa9.75□□□□□ -0.85
SHO1YER118C IOC4Q04213 475 aa9.74□□□□□ -0.85
SHO1YER118C ORC1P54784 914 aaPredicted RBP9.73□□□□□ -0.85
SHO1YER118C YCK3P39962 524 aa9.69□□□□□ -0.86
SHO1YER118C YIL055CP40523 627 aaKnown RBP9.63□□□□□ -0.87
SHO1YER118C YML020WQ03722 664 aa9.63□□□□□ -0.87
SHO1YER118C HAA1Q12753 694 aaKnown RBP9.63□□□□□ -0.87
SHO1YER118C KIN1P13185 1064 aa9.58□□□□□ -0.88
SHO1YER118C HGH1P48362 394 aaKnown RBP9.58□□□□□ -0.88
SHO1YER118C YPR148CQ06523 435 aa9.58□□□□□ -0.88
SHO1YER118C NOP8Q08287 484 aaPredicted RBP9.58□□□□□ -0.88
SHO1YER118C VPS70P47161 811 aa9.57□□□□□ -0.88
SHO1YER118C CST9Q06032 482 aa9.56□□□□□ -0.88
SHO1YER118C MRPL32P25348 183 aa9.53□□□□□ -0.88
SHO1YER118C SET1P38827 1080 aaKnown RBP9.52□□□□□ -0.89
SHO1YER118C RSM7P47150 247 aa9.5□□□□□ -0.89
SHO1YER118C DSF2P38213 736 aa9.49□□□□□ -0.89
SHO1YER118C YNR021WP53723 404 aaKnown RBP9.49□□□□□ -0.89
SHO1YER118C SLX8P40072 274 aa9.45□□□□□ -0.9
SHO1YER118C RAM2P29703 316 aa9.42□□□□□ -0.9
SHO1YER118C SSA1P10591 642 aaKnown RBP9.4□□□□□ -0.9
SHO1YER118C GEF1P37020 779 aa9.4□□□□□ -0.9
SHO1YER118C AIM7Q12156 149 aa9.4□□□□□ -0.9
SHO1YER118C PBS2P08018 668 aa9.38□□□□□ -0.91
SHO1YER118C GLC3P32775 704 aa9.38□□□□□ -0.91
SHO1YER118C PSD2P53037 1138 aaKnown RBP9.38□□□□□ -0.91
SHO1YER118C NOP7P53261 605 aaKnown RBP9.35□□□□□ -0.91
SHO1YER118C GUA1P38625 525 aaKnown RBP9.34□□□□□ -0.91
SHO1YER118C SUB2Q07478 446 aaKnown RBP9.31□□□□□ -0.92
SHO1YER118C YKR023WP36119 530 aaKnown RBP9.27□□□□□ -0.93
SHO1YER118C HPC2Q01448 625 aa9.27□□□□□ -0.93
SHO1YER118C MAM3Q12296 706 aa9.27□□□□□ -0.93
SHO1YER118C MRX12P47084 519 aa9.25□□□□□ -0.93
SHO1YER118C AI2P03876 854 aa9.23□□□□□ -0.93
SHO1YER118C IES2P40154 320 aa9.22□□□□□ -0.93
SHO1YER118C SNU71P53207 620 aaKnown RBP9.22□□□□□ -0.93
SHO1YER118C MAK21Q12176 1025 aaKnown RBP9.22□□□□□ -0.93
SHO1YER118C DIT2P21595 489 aa9.21□□□□□ -0.94
SHO1YER118C TFB3Q03290 321 aa9.21□□□□□ -0.94
SHO1YER118C NUP42P49686 430 aaKnown RBP9.2□□□□□ -0.94
SHO1YER118C TOP1P04786 769 aa9.18□□□□□ -0.94
SHO1YER118C URN1Q06525 465 aaKnown RBP9.18□□□□□ -0.94
SHO1YER118C SLD2P34252 453 aa9.17□□□□□ -0.94
SHO1YER118C CDC27P38042 758 aa9.15□□□□□ -0.94
SHO1YER118C PAM1P37304 830 aaKnown RBP9.13□□□□□ -0.95
SHO1YER118C MET10P39692 1035 aa9.13□□□□□ -0.95
SHO1YER118C MAK11P20484 414 aaKnown RBP9.12□□□□□ -0.95
SHO1YER118C RCR1P38212 213 aa9.12□□□□□ -0.95
SHO1YER118C ATF2P53296 535 aa9.12□□□□□ -0.95
SHO1YER118C BRL1P38770 471 aa9.11□□□□□ -0.95
SHO1YER118C SSA4P22202 642 aaKnown RBP9.1□□□□□ -0.95
SHO1YER118C REF2P42073 533 aaPredicted RBP9.09□□□□□ -0.95
SHO1YER118C PKC1P24583 1151 aa9.08□□□□□ -0.96
SHO1YER118C TFC8Q12308 588 aa9.08□□□□□ -0.96
SHO1YER118C HOP09932 586 aa9.07□□□□□ -0.96
SHO1YER118C BIM1P40013 344 aa9.07□□□□□ -0.96
SHO1YER118C BBC1P47068 1157 aa9.05□□□□□ -0.96
SHO1YER118C YTA7P40340 1379 aa9.04□□□□□ -0.96
SHO1YER118C GLN1P32288 370 aaKnown RBP9.04□□□□□ -0.96
SHO1YER118C RRN6P32786 894 aa9.04□□□□□ -0.96
Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms