RNA–Protein interactions for RNA: YDR243C

PRP28, Transcript of RNA helicase in the DEAD-box family, yeastyeast

Gene PRP28, Length 1,767 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP28YDR243C FAP1P53971 965 aa11.62□□□□□ -0.55
PRP28YDR243C PRY3P47033 881 aa10.98□□□□□ -0.65
PRP28YDR243C MTC1P47018 478 aaKnown RBP10.39□□□□□ -0.75
PRP28YDR243C HAA1Q12753 694 aaKnown RBP10.16□□□□□ -0.78
PRP28YDR243C YCK3P39962 524 aa10.09□□□□□ -0.79
PRP28YDR243C AAD16Q02895 342 aa10.01□□□□□ -0.81
PRP28YDR243C PRI1P10363 409 aa9.75□□□□□ -0.85
PRP28YDR243C DRS1P32892 752 aaKnown RBP9.48□□□□□ -0.89
PRP28YDR243C TSR3Q12094 313 aaKnown RBP9.15□□□□□ -0.94
PRP28YDR243C BUD31P25337 157 aaPredicted RBP9.12□□□□□ -0.95
PRP28YDR243C YGL015CP33199 130 aa9.04□□□□□ -0.96
PRP28YDR243C ISW2Q08773 1120 aa9.02□□□□□ -0.97
PRP28YDR243C RPG1P38249 964 aaKnown RBP8.94□□□□□ -0.98
PRP28YDR243C MRPL32P25348 183 aa8.86□□□□□ -0.99
PRP28YDR243C SIS1P25294 352 aaKnown RBP8.6□□□□□ -1.03
PRP28YDR243C DIP2Q12220 943 aaPredicted RBP8.2□□□□□ -1.1
PRP28YDR243C UBP9P39967 754 aa8.19□□□□□ -1.1
PRP28YDR243C RSE1Q04693 1361 aaKnown RBP8.09□□□□□ -1.11
PRP28YDR243C UBP10P53874 792 aaPredicted RBP8.03□□□□□ -1.12
PRP28YDR243C BFR2Q06631 534 aaKnown RBP8.03□□□□□ -1.12
PRP28YDR243C AVT3P36062 692 aa8.02□□□□□ -1.13
PRP28YDR243C MAP2P38174 421 aaKnown RBP7.97□□□□□ -1.13
PRP28YDR243C CDC27P38042 758 aa7.95□□□□□ -1.14
PRP28YDR243C REB1P21538 810 aa7.87□□□□□ -1.15
PRP28YDR243C RPL17AP05740 184 aaKnown RBP7.85□□□□□ -1.15
PRP28YDR243C RPL17BP46990 184 aaKnown RBP7.85□□□□□ -1.15
PRP28YDR243C TIF4632P39936 914 aaKnown RBP7.79□□□□□ -1.16
PRP28YDR243C TGL3P40308 642 aa7.72□□□□□ -1.17
PRP28YDR243C YKR023WP36119 530 aaKnown RBP7.54□□□□□ -1.2
PRP28YDR243C SLX5P32828 619 aaKnown RBP7.52□□□□□ -1.21
PRP28YDR243C SPT21P35209 758 aa7.51□□□□□ -1.21
PRP28YDR243C SCY1P53009 804 aa7.48□□□□□ -1.21
PRP28YDR243C TFC8Q12308 588 aa7.39□□□□□ -1.23
PRP28YDR243C YBL029C-AQ3E756 94 aa7.38□□□□□ -1.23
PRP28YDR243C YJL171CP46992 396 aa7.36□□□□□ -1.23
PRP28YDR243C TFA1P36100 482 aa7.36□□□□□ -1.23
PRP28YDR243C DCD1P06773 312 aa7.35□□□□□ -1.23
PRP28YDR243C HOP09932 586 aa7.35□□□□□ -1.23
PRP28YDR243C VNX1P42839 908 aa7.18□□□□□ -1.26
PRP28YDR243C SPP1Q03012 353 aa7.18□□□□□ -1.26
PRP28YDR243C AIR2Q12476 344 aaKnown RBP7.18□□□□□ -1.26
PRP28YDR243C RQC2Q12532 1038 aaKnown RBP7.16□□□□□ -1.26
PRP28YDR243C RIM101P33400 625 aa7.14□□□□□ -1.27
PRP28YDR243C BCH2P36122 765 aa7.12□□□□□ -1.27
PRP28YDR243C MST1P07236 462 aa7.1□□□□□ -1.27
PRP28YDR243C FKH1P40466 484 aa7.09□□□□□ -1.27
PRP28YDR243C YOR238WQ08634 303 aa7.06□□□□□ -1.28
PRP28YDR243C BMT6Q12291 365 aa7.03□□□□□ -1.28
PRP28YDR243C WSC3Q12215 556 aa7□□□□□ -1.29
PRP28YDR243C RGA2Q06407 1009 aa6.97□□□□□ -1.29
PRP28YDR243C TIF11P38912 153 aaKnown RBP6.93□□□□□ -1.3
PRP28YDR243C EPS1P40557 701 aa6.9□□□□□ -1.3
PRP28YDR243C BDF1P35817 686 aa6.9□□□□□ -1.31
PRP28YDR243C OXP1P28273 1286 aa6.89□□□□□ -1.31
PRP28YDR243C LDB19Q12502 818 aa6.84□□□□□ -1.31
PRP28YDR243C NSR1P27476 414 aaKnown RBP RIP-Chip data6.82□□□□□ -1.32not detected
PRP28YDR243C PTP3P40048 928 aa6.74□□□□□ -1.33
PRP28YDR243C YIL055CP40523 627 aaKnown RBP6.74□□□□□ -1.33
PRP28YDR243C GTT3P39996 337 aa6.73□□□□□ -1.33
PRP28YDR243C YAP5P40574 245 aa6.73□□□□□ -1.33
PRP28YDR243C ULI1P43604 169 aa6.73□□□□□ -1.33
PRP28YDR243C BBC1P47068 1157 aa6.69□□□□□ -1.34
PRP28YDR243C YAH1Q12184 172 aaKnown RBP6.69□□□□□ -1.34
PRP28YDR243C RSM7P47150 247 aa6.67□□□□□ -1.34
PRP28YDR243C IOC2Q12072 812 aa6.66□□□□□ -1.34
PRP28YDR243C AI2P03876 854 aa6.64□□□□□ -1.35
PRP28YDR243C BCK2P33306 851 aa6.63□□□□□ -1.35
PRP28YDR243C YLR271WQ06152 274 aa6.62□□□□□ -1.35
PRP28YDR243C SSP1P38871 571 aa6.61□□□□□ -1.35
PRP28YDR243C RGA1P39083 1007 aa6.58□□□□□ -1.36
PRP28YDR243C RTG1P32607 177 aa6.54□□□□□ -1.36
PRP28YDR243C NCR1Q12200 1170 aa6.54□□□□□ -1.36
PRP28YDR243C ARP8Q12386 881 aaKnown RBP RIP-Chip data6.52□□□□□ -1.37not detected
PRP28YDR243C NOP2P40991 618 aaKnown RBP6.51□□□□□ -1.37
PRP28YDR243C PSD2P53037 1138 aaKnown RBP6.49□□□□□ -1.37
PRP28YDR243C URN1Q06525 465 aaKnown RBP6.49□□□□□ -1.37
PRP28YDR243C EAP1P36041 632 aaKnown RBP6.46□□□□□ -1.37
PRP28YDR243C EBP2P36049 427 aaKnown RBP6.43□□□□□ -1.38
PRP28YDR243C MSB4Q12317 492 aa6.42□□□□□ -1.38
PRP28YDR243C CAB3P36076 571 aa6.41□□□□□ -1.38
PRP28YDR243C MGA2P40578 1113 aa6.41□□□□□ -1.38
PRP28YDR243C CST9Q06032 482 aa6.4□□□□□ -1.38
PRP28YDR243C TFG1P41895 735 aaPredicted RBP6.39□□□□□ -1.39
PRP28YDR243C PIB1Q06651 286 aa6.39□□□□□ -1.39
PRP28YDR243C SEC61P32915 480 aa6.39□□□□□ -1.39
PRP28YDR243C CHL1P22516 861 aaPredicted RBP6.37□□□□□ -1.39
PRP28YDR243C YNL035CP53962 389 aaKnown RBP6.36□□□□□ -1.39
PRP28YDR243C TAF7Q05021 590 aa6.36□□□□□ -1.39
PRP28YDR243C MRM1P25270 412 aa6.36□□□□□ -1.39
PRP28YDR243C SIS2P36024 562 aa6.34□□□□□ -1.4
PRP28YDR243C TRP5P00931 707 aaKnown RBP6.33□□□□□ -1.4
PRP28YDR243C DPS1P04802 557 aaKnown RBP6.33□□□□□ -1.4
PRP28YDR243C SAP30P38429 201 aa6.32□□□□□ -1.4
PRP28YDR243C YOL036WQ08206 761 aa6.32□□□□□ -1.4
PRP28YDR243C XDJ1P39102 459 aa6.31□□□□□ -1.4
PRP28YDR243C SET4P42948 560 aa6.3□□□□□ -1.4
PRP28YDR243C YMR1P47147 688 aaKnown RBP RIP-Chip data6.29□□□□□ -1.4not detected
PRP28YDR243C PRE3P38624 215 aa6.27□□□□□ -1.41
PRP28YDR243C DBP1P24784 617 aaKnown RBP6.26□□□□□ -1.41
PRP28YDR243C VPS29P38759 282 aa6.26□□□□□ -1.41
Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms