RNA–Protein interactions for RNA: ENST00000640027.1

MED17-222, Transcript of mediator complex subunit 17, human

TSL 5

Gene MED17, Length 4,569 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MED17-222	ENST00000640027	NISCH	Q9Y2I1	1504 aa		24.45	■■□□□ 1.5
MED17-222	ENST00000640027	DCAF8L2	P0C7V8	631 aa		24.41	■■□□□ 1.5
MED17-222	ENST00000640027	SUPT5H	O00267	1087 aa	Known RBP	22.84	■■□□□ 1.25
MED17-222	ENST00000640027	EHMT2	Q96KQ7	1210 aa		22.34	■■□□□ 1.17
MED17-222	ENST00000640027	SHROOM4	Q9ULL8	1493 aa		22.19	■■□□□ 1.14
MED17-222	ENST00000640027	APLP2	Q06481	763 aa		22.01	■■□□□ 1.11
MED17-222	ENST00000640027	PELP1	Q8IZL8	1130 aa	Known RBP	21.89	■■□□□ 1.09
MED17-222	ENST00000640027	FAM9A	Q8IZU1	332 aa	Predicted RBP	21.81	■■□□□ 1.08
MED17-222	ENST00000640027	TTBK1	Q5TCY1	1321 aa	Predicted RBP	21.55	■■□□□ 1.04
MED17-222	ENST00000640027	RANGAP1	P46060	587 aa	Predicted RBP	21.41	■■□□□ 1.02
MED17-222	ENST00000640027	ATP1B4	Q9UN42	357 aa	Predicted RBP	21.31	■■□□□ 1
MED17-222	ENST00000640027	PCGF6	Q9BYE7	350 aa		21.3	■■□□□ 1
MED17-222	ENST00000640027	TRIM41	Q8WV44	630 aa		21.07	■□□□□ 0.96
MED17-222	ENST00000640027	UBTF	P17480	764 aa	Known RBP	21.02	■□□□□ 0.96
MED17-222	ENST00000640027	CCER1	Q8TC90	406 aa	Predicted RBP	21	■□□□□ 0.95
MED17-222	ENST00000640027	ERICH6	Q7L0X2	663 aa		20.99	■□□□□ 0.95
MED17-222	ENST00000640027	CCDC180	Q9P1Z9	1646 aa		20.95	■□□□□ 0.94
MED17-222	ENST00000640027	CENPB	P07199	599 aa	Predicted RBP	20.94	■□□□□ 0.94
MED17-222	ENST00000640027	ZEB1	P37275	1124 aa	Predicted RBP	20.79	■□□□□ 0.92
MED17-222	ENST00000640027	NEFL	P07196	543 aa		20.72	■□□□□ 0.91
MED17-222	ENST00000640027	MYT1L	Q9UL68	1186 aa		20.69	■□□□□ 0.9
MED17-222	ENST00000640027	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	20.6	■□□□□ 0.89
MED17-222	ENST00000640027	HNRNPUL2	Q1KMD3	747 aa	Known RBP	20.6	■□□□□ 0.89
MED17-222	ENST00000640027	ZCCHC6	Q5VYS8	1495 aa	Known RBP	20.58	■□□□□ 0.89
MED17-222	ENST00000640027	YTHDC1	Q96MU7	727 aa	Known RBP	20.54	■□□□□ 0.88
MED17-222	ENST00000640027	PPARGC1B	Q86YN6	1023 aa	Known RBP	20.53	■□□□□ 0.88
MED17-222	ENST00000640027	POLR3GL	Q9BT43	218 aa		20.45	■□□□□ 0.86
MED17-222	ENST00000640027	ITGAE	P38570	1179 aa		20.44	■□□□□ 0.86
MED17-222	ENST00000640027	CHIC1	Q5VXU3	224 aa		20.3	■□□□□ 0.84
MED17-222	ENST00000640027	CNGB1	Q14028	1251 aa	Predicted RBP	20.27	■□□□□ 0.84
MED17-222	ENST00000640027	DAXX	Q9UER7	740 aa	Predicted RBP	20.24	■□□□□ 0.83
MED17-222	ENST00000640027	SLC4A1AP	Q9BWU0	796 aa	Known RBP	20.17	■□□□□ 0.82
MED17-222	ENST00000640027	TRIM26	Q12899	539 aa	Predicted RBP	20.11	■□□□□ 0.81
MED17-222	ENST00000640027	DCAF1	Q9Y4B6	1507 aa		20.05	■□□□□ 0.8
MED17-222	ENST00000640027	LOC105371045	A0A1W2PR82	267 aa		19.95	■□□□□ 0.78
MED17-222	ENST00000640027	HRC	P23327	699 aa		19.91	■□□□□ 0.78
MED17-222	ENST00000640027	CLSPN	Q9HAW4	1339 aa		19.89	■□□□□ 0.77
MED17-222	ENST00000640027	MYT1	Q01538	1121 aa		19.86	■□□□□ 0.77
MED17-222	ENST00000640027	FAM50A	Q14320	339 aa	Known RBP	19.8	■□□□□ 0.76
MED17-222	ENST00000640027	ABCC9	O60706	1549 aa		19.8	■□□□□ 0.76
MED17-222	ENST00000640027	TRIM52	Q96A61	297 aa		19.78	■□□□□ 0.76
MED17-222	ENST00000640027	FBLN2	P98095	1184 aa		19.7	■□□□□ 0.74
MED17-222	ENST00000640027	PABPN1	Q86U42	306 aa	Known RBP eCLIP	19.68	■□□□□ 0.74
MED17-222	ENST00000640027	ZNF316	A6NFI3	1004 aa	Predicted RBP	19.68	■□□□□ 0.74
MED17-222	ENST00000640027	ZNF326	Q5BKZ1	582 aa	Known RBP	19.64	■□□□□ 0.73
MED17-222	ENST00000640027	MYO15B	Q96JP2	1530 aa		19.62	■□□□□ 0.73
MED17-222	ENST00000640027	NEUROD1	Q13562	356 aa		19.61	■□□□□ 0.73
MED17-222	ENST00000640027	SCRIB	Q14160	1630 aa		19.6	■□□□□ 0.73
MED17-222	ENST00000640027	RTL5	Q5HYW3	569 aa	Predicted RBP	19.59	■□□□□ 0.73
MED17-222	ENST00000640027	ZBTB47	Q9UFB7	747 aa	Predicted RBP	19.56	■□□□□ 0.72
MED17-222	ENST00000640027	SLC24A1	O60721	1099 aa		19.56	■□□□□ 0.72
MED17-222	ENST00000640027	BCAN	Q96GW7	911 aa		19.53	■□□□□ 0.72
MED17-222	ENST00000640027	NACAD	O15069	1562 aa		19.52	■□□□□ 0.72
MED17-222	ENST00000640027	DIEXF	Q68CQ4	756 aa	Known RBP	19.52	■□□□□ 0.72
MED17-222	ENST00000640027	BCL11A	Q9H165	835 aa		19.47	■□□□□ 0.71
MED17-222	ENST00000640027	NEFM	P07197	916 aa		19.42	■□□□□ 0.7
MED17-222	ENST00000640027	ARID3C	A6NKF2	412 aa		19.39	■□□□□ 0.69
MED17-222	ENST00000640027	ANP32C	O43423	234 aa		19.37	■□□□□ 0.69
MED17-222	ENST00000640027	CANX	P27824	592 aa	Known RBP	19.32	■□□□□ 0.68
MED17-222	ENST00000640027	P3H3	Q8IVL6	736 aa		19.31	■□□□□ 0.68
MED17-222	ENST00000640027	ESF1	Q9H501	851 aa	Known RBP	19.31	■□□□□ 0.68
MED17-222	ENST00000640027	RB1CC1	Q8TDY2	1594 aa		19.31	■□□□□ 0.68
MED17-222	ENST00000640027	ZNF777	Q9ULD5	760 aa	Predicted RBP	19.28	■□□□□ 0.68
MED17-222	ENST00000640027	RSF1	Q96T23	1441 aa	Predicted RBP	19.21	■□□□□ 0.67
MED17-222	ENST00000640027	CDK11A	Q9UQ88	783 aa	Predicted RBP	19.18	■□□□□ 0.66
MED17-222	ENST00000640027	PLPPR3	Q6T4P5	718 aa		19.17	■□□□□ 0.66
MED17-222	ENST00000640027	STAG3	Q9UJ98	1225 aa		19.16	■□□□□ 0.66
MED17-222	ENST00000640027	CHGA	P10645	457 aa	Known RBP	19.15	■□□□□ 0.66
MED17-222	ENST00000640027	NPM1	P06748	294 aa	Known RBP eCLIP	19.11	■□□□□ 0.65
MED17-222	ENST00000640027	CSRNP3	Q8WYN3	585 aa		19.08	■□□□□ 0.64
MED17-222	ENST00000640027	CECR2	Q9BXF3	1484 aa		19.06	■□□□□ 0.64
MED17-222	ENST00000640027	GTF3C3	Q9Y5Q9	886 aa		19.02	■□□□□ 0.64
MED17-222	ENST00000640027	MROH2B	Q7Z745	1585 aa		18.96	■□□□□ 0.62
MED17-222	ENST00000640027	ANP32A	P39687	249 aa	Known RBP	18.9	■□□□□ 0.62
MED17-222	ENST00000640027	HSP90AA1	P07900	732 aa	Known RBP	18.89	■□□□□ 0.61
MED17-222	ENST00000640027	NPM2	Q86SE8	214 aa	Known RBP	18.88	■□□□□ 0.61
MED17-222	ENST00000640027	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	18.86	■□□□□ 0.61
MED17-222	ENST00000640027	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	18.86	■□□□□ 0.61	1e-7	■■■■□ 23.9
MED17-222	ENST00000640027	TONSL	Q96HA7	1378 aa		18.85	■□□□□ 0.61
MED17-222	ENST00000640027	SALL2	Q9Y467	1007 aa	Predicted RBP	18.83	■□□□□ 0.61
MED17-222	ENST00000640027	WIZ	O95785	1651 aa		18.81	■□□□□ 0.6
MED17-222	ENST00000640027		A0A0G2JS52	829 aa		18.81	■□□□□ 0.6
MED17-222	ENST00000640027	SCAF1	Q9H7N4	1312 aa	Known RBP	18.81	■□□□□ 0.6
MED17-222	ENST00000640027	TSPY4	P0CV99	314 aa		18.79	■□□□□ 0.6
MED17-222	ENST00000640027	TSPY10	P0CW01	314 aa		18.79	■□□□□ 0.6
MED17-222	ENST00000640027	CHIC2	Q9UKJ5	165 aa		18.78	■□□□□ 0.6
MED17-222	ENST00000640027	UPF2	Q9HAU5	1272 aa	Known RBP	18.78	■□□□□ 0.6
MED17-222	ENST00000640027	HNRNPU	Q00839	825 aa	Known RBP eCLIP	18.77	■□□□□ 0.59
MED17-222	ENST00000640027	FAM9B	Q8IZU0	186 aa		18.77	■□□□□ 0.59
MED17-222	ENST00000640027	ANP32B	Q92688	251 aa	Known RBP	18.76	■□□□□ 0.59
MED17-222	ENST00000640027	UNC13A	Q9UPW8	1703 aa		18.76	■□□□□ 0.59
MED17-222	ENST00000640027	TMC1	Q8TDI8	760 aa		18.73	■□□□□ 0.59
MED17-222	ENST00000640027	DDX10	Q13206	875 aa	Known RBP	18.72	■□□□□ 0.59
MED17-222	ENST00000640027	KDM2A	Q9Y2K7	1162 aa		18.7	■□□□□ 0.58
MED17-222	ENST00000640027	PLEKHG5	O94827	1062 aa		18.69	■□□□□ 0.58
MED17-222	ENST00000640027	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	18.69	■□□□□ 0.58
MED17-222	ENST00000640027	SMARCA4	P51532	1647 aa		18.68	■□□□□ 0.58
MED17-222	ENST00000640027	FKBP8	Q14318	412 aa		18.66	■□□□□ 0.58
MED17-222	ENST00000640027	CHMP7	Q8WUX9	453 aa	Predicted RBP	18.65	■□□□□ 0.58
MED17-222	ENST00000640027	WDR43	Q15061	677 aa	Known RBP eCLIP	18.64	■□□□□ 0.58

Retrieved 100 of 20,778 RNA–protein pairs in 153.1 ms