RNA–Protein interactions for RNA: ENST00000639487.1

RTTN-215, Transcript of rotatin, humanhuman

TSL 5

Gene RTTN, Length 3,175 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTTN-215ENST00000639487 NISCHQ9Y2I1 1504 aa17.76■□□□□ 0.43
RTTN-215ENST00000639487 CCDC180Q9P1Z9 1646 aa16.89■□□□□ 0.29
RTTN-215ENST00000639487 MYO15BQ96JP2 1530 aa15.99■□□□□ 0.15
RTTN-215ENST00000639487 DCAF1Q9Y4B6 1507 aa15.78■□□□□ 0.12
RTTN-215ENST00000639487 SHROOM4Q9ULL8 1493 aa15.5■□□□□ 0.07
RTTN-215ENST00000639487 NACADO15069 1562 aa15.25■□□□□ 0.03
RTTN-215ENST00000639487 ZCCHC6Q5VYS8 1495 aaKnown RBP15.08■□□□□ 0
RTTN-215ENST00000639487 UNC13AQ9UPW8 1703 aa15.01□□□□□ -0.01
RTTN-215ENST00000639487 RB1CC1Q8TDY2 1594 aa14.95□□□□□ -0.02
RTTN-215ENST00000639487 BICRAQ9NZM4 1560 aa14.54□□□□□ -0.08
RTTN-215ENST00000639487 PEG3Q9GZU2 1588 aa14.52□□□□□ -0.08
RTTN-215ENST00000639487 SMARCA2P51531 1590 aa14.33□□□□□ -0.11
RTTN-215ENST00000639487 PRDM2Q13029 1718 aa14.29□□□□□ -0.12
RTTN-215ENST00000639487 ABCC9O60706 1549 aa14.14□□□□□ -0.15
RTTN-215ENST00000639487 HMGXB3Q12766 1538 aa14.12□□□□□ -0.15
RTTN-215ENST00000639487 SMARCA4P51532 1647 aa13.91□□□□□ -0.18
RTTN-215ENST00000639487 BAZ1AQ9NRL2 1556 aaPredicted RBP13.87□□□□□ -0.19
RTTN-215ENST00000639487 WDR97A6NE52 1622 aa13.86□□□□□ -0.19
RTTN-215ENST00000639487 EIF4G1Q04637 1599 aaKnown RBP13.84□□□□□ -0.19
RTTN-215ENST00000639487 NCAPD3P42695 1498 aa13.73□□□□□ -0.21
RTTN-215ENST00000639487 SCRIBQ14160 1630 aa13.71□□□□□ -0.21
RTTN-215ENST00000639487 CC2D2AQ9P2K1 1620 aa13.61□□□□□ -0.23
RTTN-215ENST00000639487 TOP2AP11388 1531 aaKnown RBP13.6□□□□□ -0.23
RTTN-215ENST00000639487 LAMC3Q9Y6N6 1575 aa13.59□□□□□ -0.23
RTTN-215ENST00000639487 BAZ1BQ9UIG0 1483 aaKnown RBP13.54□□□□□ -0.24
RTTN-215ENST00000639487 ATAD2BQ9ULI0 1458 aa13.41□□□□□ -0.26
RTTN-215ENST00000639487 THOC2Q8NI27 1593 aaKnown RBP13.38□□□□□ -0.27
RTTN-215ENST00000639487 BIVM-ERCC5R4GMW8 1640 aa13.34□□□□□ -0.27
RTTN-215ENST00000639487 WDR62O43379 1518 aa13.28□□□□□ -0.28
RTTN-215ENST00000639487 MROH2BQ7Z745 1585 aa13.25□□□□□ -0.29
RTTN-215ENST00000639487 CUX2O14529 1486 aa13.22□□□□□ -0.29
RTTN-215ENST00000639487 WIZO95785 1651 aa13.2□□□□□ -0.3
RTTN-215ENST00000639487 ABCC8Q09428 1581 aa13.17□□□□□ -0.3
RTTN-215ENST00000639487 CFTRP13569 1480 aa13.16□□□□□ -0.3
RTTN-215ENST00000639487 KIF21AQ7Z4S6 1674 aa13.12□□□□□ -0.31
RTTN-215ENST00000639487 RSF1Q96T23 1441 aaPredicted RBP13.11□□□□□ -0.31
RTTN-215ENST00000639487 DNMBPQ6XZF7 1577 aa13.03□□□□□ -0.32
RTTN-215ENST00000639487 CECR2Q9BXF3 1484 aa13.02□□□□□ -0.33
RTTN-215ENST00000639487 TARBP1Q13395 1621 aaKnown RBP13□□□□□ -0.33
RTTN-215ENST00000639487 TOP2BQ02880 1626 aa12.98□□□□□ -0.33
RTTN-215ENST00000639487 ABCA5Q8WWZ7 1642 aa12.98□□□□□ -0.33
RTTN-215ENST00000639487 PBRM1Q86U86 1689 aa12.9□□□□□ -0.34
RTTN-215ENST00000639487 SHROOM2Q13796 1616 aa12.86□□□□□ -0.35
RTTN-215ENST00000639487 CUL7Q14999 1698 aa12.86□□□□□ -0.35
RTTN-215ENST00000639487 MRC2Q9UBG0 1479 aa12.85□□□□□ -0.35
RTTN-215ENST00000639487 CCDC88BA6NC98 1476 aa12.78□□□□□ -0.36
RTTN-215ENST00000639487 CADPSQ9ULU8 1353 aa12.78□□□□□ -0.36
RTTN-215ENST00000639487 PDS5BQ9NTI5 1447 aa12.76□□□□□ -0.37
RTTN-215ENST00000639487 ERICH3Q5RHP9 1530 aa12.75□□□□□ -0.37
RTTN-215ENST00000639487 ABCA10Q8WWZ4 1543 aa12.71□□□□□ -0.37
RTTN-215ENST00000639487 IFT140Q96RY7 1462 aa12.69□□□□□ -0.38
RTTN-215ENST00000639487 CEP164Q9UPV0 1460 aa12.67□□□□□ -0.38
RTTN-215ENST00000639487 NESP48681 1621 aa12.67□□□□□ -0.38
RTTN-215ENST00000639487 CLASP1Q7Z460 1538 aa12.66□□□□□ -0.38
RTTN-215ENST00000639487 ADAMTS12P58397 1594 aa12.63□□□□□ -0.39
RTTN-215ENST00000639487 CTTNBP2Q8WZ74 1663 aa12.63□□□□□ -0.39
RTTN-215ENST00000639487 URB2Q14146 1524 aaKnown RBP12.63□□□□□ -0.39
RTTN-215ENST00000639487 TOPBP1Q92547 1522 aa12.62□□□□□ -0.39
RTTN-215ENST00000639487 EIF4G3O43432 1585 aaKnown RBP12.61□□□□□ -0.39
RTTN-215ENST00000639487 FANCD2Q9BXW9 1451 aa12.59□□□□□ -0.39
RTTN-215ENST00000639487 CUX1P39880 1505 aa12.59□□□□□ -0.39
RTTN-215ENST00000639487 KIF21BO75037 1637 aa12.58□□□□□ -0.4
RTTN-215ENST00000639487 MAGI1Q96QZ7 1491 aaPredicted RBP12.57□□□□□ -0.4
RTTN-215ENST00000639487 SYNJ1O43426 1573 aa12.51□□□□□ -0.41
RTTN-215ENST00000639487 CHD1O14646 1710 aa12.49□□□□□ -0.41
RTTN-215ENST00000639487 EEA1Q15075 1411 aa12.48□□□□□ -0.41
RTTN-215ENST00000639487 RUSC2Q8N2Y8 1516 aa12.47□□□□□ -0.41
RTTN-215ENST00000639487 SAMD9Q5K651 1589 aa12.44□□□□□ -0.42
RTTN-215ENST00000639487 POLA1P09884 1462 aaPredicted RBP12.4□□□□□ -0.42
RTTN-215ENST00000639487 NUP160Q12769 1436 aa12.37□□□□□ -0.43
RTTN-215ENST00000639487 UGGT2Q9NYU1 1516 aa12.35□□□□□ -0.43
RTTN-215ENST00000639487 DNAJC5BQ9UF47 199 aa12.33□□□□□ -0.44
RTTN-215ENST00000639487 ADCY10Q96PN6 1610 aa12.32□□□□□ -0.44
RTTN-215ENST00000639487 EFCAB5A4FU69 1503 aa12.3□□□□□ -0.44
RTTN-215ENST00000639487 GRIN2BQ13224 1484 aa12.29□□□□□ -0.44
RTTN-215ENST00000639487 UHRF1BP1LA0JNW5 1464 aa12.28□□□□□ -0.44
RTTN-215ENST00000639487 SYNJ2O15056 1496 aa12.28□□□□□ -0.44
RTTN-215ENST00000639487 GLI2P10070 1586 aa12.28□□□□□ -0.44
RTTN-215ENST00000639487 FGD5Q6ZNL6 1462 aa12.27□□□□□ -0.45
RTTN-215ENST00000639487 PABPN1Q86U42 306 aaKnown RBP eCLIP12.27□□□□□ -0.45
RTTN-215ENST00000639487 KDM5BQ9UGL1 1544 aa12.26□□□□□ -0.45
RTTN-215ENST00000639487 BCORL1Q5H9F3 1711 aa12.25□□□□□ -0.45
RTTN-215ENST00000639487 PRXQ9BXM0 1461 aa12.22□□□□□ -0.45
RTTN-215ENST00000639487 ARAP3Q8WWN8 1544 aa12.21□□□□□ -0.45
RTTN-215ENST00000639487 CEP170Q5SW79 1584 aa12.21□□□□□ -0.45
RTTN-215ENST00000639487 MAP3K1Q13233 1512 aa12.2□□□□□ -0.46
RTTN-215ENST00000639487 WRNQ14191 1432 aaPredicted RBP eCLIP12.19□□□□□ -0.46
RTTN-215ENST00000639487 MAPKBP1O60336 1514 aa12.18□□□□□ -0.46
RTTN-215ENST00000639487 FHAD1B1AJZ9 1412 aa12.18□□□□□ -0.46
RTTN-215ENST00000639487 AQRO60306 1485 aaKnown RBP eCLIP12.16□□□□□ -0.46
RTTN-215ENST00000639487 CFAP43Q8NDM7 1665 aa12.15□□□□□ -0.46
RTTN-215ENST00000639487 IQGAP2Q13576 1575 aa12.14□□□□□ -0.47
RTTN-215ENST00000639487 GRIN2AQ12879 1464 aa12.12□□□□□ -0.47
RTTN-215ENST00000639487 KIAA0556O60303 1618 aa12.11□□□□□ -0.47
RTTN-215ENST00000639487 ERCC6Q03468 1493 aa12.1□□□□□ -0.47
RTTN-215ENST00000639487 ABCA8O94911 1581 aa12.1□□□□□ -0.47
RTTN-215ENST00000639487 FAM135AQ9P2D6 1515 aa12.1□□□□□ -0.47
RTTN-215ENST00000639487 CFAP74Q9C0B2 1584 aa12.1□□□□□ -0.47
RTTN-215ENST00000639487 GAPVD1Q14C86 1478 aa12.08□□□□□ -0.48
RTTN-215ENST00000639487 MAP3K4Q9Y6R4 1608 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms