RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 AEBP2Q6ZN18 517 aaPredicted RBP9.99□□□□□ -0.81
SMARCB1-209ENST00000635578 CHIC1Q5VXU3 224 aa9.32□□□□□ -0.92
SMARCB1-209ENST00000635578 SENP3Q9H4L4 574 aaPredicted RBP8.53□□□□□ -1.04
SMARCB1-209ENST00000635578 PHF23Q9BUL5 403 aaPredicted RBP8.4□□□□□ -1.06
SMARCB1-209ENST00000635578 FOXD1Q16676 465 aa7.98□□□□□ -1.13
SMARCB1-209ENST00000635578 POTEDQ86YR6 584 aa7.59□□□□□ -1.19
SMARCB1-209ENST00000635578 MSH5O43196 834 aa7.5□□□□□ -1.21
SMARCB1-209ENST00000635578 PIAS4Q8N2W9 510 aaPredicted RBP7.45□□□□□ -1.22
SMARCB1-209ENST00000635578 PLPPR3Q6T4P5 718 aa7.38□□□□□ -1.23
SMARCB1-209ENST00000635578 PPP6R1Q9UPN7 881 aa7.36□□□□□ -1.23
SMARCB1-209ENST00000635578 ADRA2BP18089 450 aa7.35□□□□□ -1.23
SMARCB1-209ENST00000635578 MAPK8IP2Q13387 824 aaPredicted RBP6.8□□□□□ -1.32
SMARCB1-209ENST00000635578 DMRT2Q9Y5R5 561 aa6.73□□□□□ -1.33
SMARCB1-209ENST00000635578 SCAF1Q9H7N4 1312 aaKnown RBP6.69□□□□□ -1.34
SMARCB1-209ENST00000635578 CACNB1Q02641 598 aaPredicted RBP6.57□□□□□ -1.36
SMARCB1-209ENST00000635578 DCAF8L1A6NGE4 600 aa6.56□□□□□ -1.36
SMARCB1-209ENST00000635578 PPP4R3CPQ6ZMV5 832 aa6.47□□□□□ -1.37
SMARCB1-209ENST00000635578 HOXD11P31277 338 aaPredicted RBP6.4□□□□□ -1.38
SMARCB1-209ENST00000635578 RNF39Q9H2S5 420 aa6.39□□□□□ -1.39
SMARCB1-209ENST00000635578 CNKSR2Q8WXI2 1034 aa6.36□□□□□ -1.39
SMARCB1-209ENST00000635578 RNF216Q9NWF9 866 aaPredicted RBP6.33□□□□□ -1.4
SMARCB1-209ENST00000635578 C1QBPQ07021 282 aaKnown RBP6.27□□□□□ -1.41
SMARCB1-209ENST00000635578 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.18□□□□□ -1.426e-9■□□□□ 8.2
SMARCB1-209ENST00000635578 NCBP3Q53F19 620 aaKnown RBP6.17□□□□□ -1.42
SMARCB1-209ENST00000635578 DNAJC5BQ9UF47 199 aa6.15□□□□□ -1.42
SMARCB1-209ENST00000635578 NPM3O75607 178 aaKnown RBP6.09□□□□□ -1.43
SMARCB1-209ENST00000635578 U3KPZ7 1027 aaPredicted RBP6□□□□□ -1.45
SMARCB1-209ENST00000635578 CAPN15O75808 1086 aa5.99□□□□□ -1.45
SMARCB1-209ENST00000635578 SPINK5Q9NQ38 1064 aaPredicted RBP5.98□□□□□ -1.45
SMARCB1-209ENST00000635578 DSG3P32926 999 aa5.94□□□□□ -1.46
SMARCB1-209ENST00000635578 POTEHQ6S545 545 aa5.92□□□□□ -1.46
SMARCB1-209ENST00000635578 TRHP20396 242 aaPredicted RBP5.87□□□□□ -1.47
SMARCB1-209ENST00000635578 KCNA4P22459 653 aa5.87□□□□□ -1.47
SMARCB1-209ENST00000635578 ABCB7O75027 752 aa5.86□□□□□ -1.47
SMARCB1-209ENST00000635578 SLC4A2P04920 1241 aa5.85□□□□□ -1.47
SMARCB1-209ENST00000635578 ZNF219Q9P2Y4 722 aaPredicted RBP5.8□□□□□ -1.48
SMARCB1-209ENST00000635578 APLP2Q06481 763 aa5.79□□□□□ -1.48
SMARCB1-209ENST00000635578 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.75□□□□□ -1.49
SMARCB1-209ENST00000635578 HNRNPUL2Q1KMD3 747 aaKnown RBP5.75□□□□□ -1.49
SMARCB1-209ENST00000635578 SAMD1Q6SPF0 538 aaPredicted RBP5.73□□□□□ -1.49
SMARCB1-209ENST00000635578 RBM42Q9BTD8 480 aaKnown RBP5.67□□□□□ -1.5
SMARCB1-209ENST00000635578 POLA2Q14181 598 aa5.65□□□□□ -1.5
SMARCB1-209ENST00000635578 MYCNP04198 464 aaPredicted RBP5.63□□□□□ -1.51
SMARCB1-209ENST00000635578 CHRDL2Q6WN34 429 aa5.63□□□□□ -1.51
SMARCB1-209ENST00000635578 ATF5Q9Y2D1 282 aaPredicted RBP5.54□□□□□ -1.52
SMARCB1-209ENST00000635578 SLC4A1APQ9BWU0 796 aaKnown RBP5.52□□□□□ -1.53
SMARCB1-209ENST00000635578 OSCARQ8IYS5 282 aa5.5□□□□□ -1.53
SMARCB1-209ENST00000635578 AKT1S1Q96B36 256 aa5.5□□□□□ -1.53
SMARCB1-209ENST00000635578 FOXD4L1Q9NU39 408 aa5.49□□□□□ -1.53
SMARCB1-209ENST00000635578 ZBTB12Q9Y330 459 aaPredicted RBP5.49□□□□□ -1.53
SMARCB1-209ENST00000635578 REM2Q8IYK8 340 aaPredicted RBP5.48□□□□□ -1.53
SMARCB1-209ENST00000635578 SP7Q8TDD2 431 aaPredicted RBP5.48□□□□□ -1.53
SMARCB1-209ENST00000635578 PIP4P2Q8N4L2 257 aa5.46□□□□□ -1.54
SMARCB1-209ENST00000635578 HAX1O00165 279 aa5.43□□□□□ -1.54
SMARCB1-209ENST00000635578 PITPNM1O00562 1244 aa5.43□□□□□ -1.54
SMARCB1-209ENST00000635578 ZBTB22O15209 634 aa5.39□□□□□ -1.55
SMARCB1-209ENST00000635578 FXR2P51116 673 aaKnown RBP eCLIP5.37□□□□□ -1.55
SMARCB1-209ENST00000635578 EVX2Q03828 476 aa5.33□□□□□ -1.56
SMARCB1-209ENST00000635578 FBLN2P98095 1184 aa5.32□□□□□ -1.56
SMARCB1-209ENST00000635578 SPDYE2BA6NHP3 402 aa5.31□□□□□ -1.56
SMARCB1-209ENST00000635578 SPDYE6P0CI01 402 aa5.31□□□□□ -1.56
SMARCB1-209ENST00000635578 SPDYE2Q495Y8 402 aa5.31□□□□□ -1.56
SMARCB1-209ENST00000635578 CLEC11AQ9Y240 323 aa5.31□□□□□ -1.56
SMARCB1-209ENST00000635578 ATXN8OSP0DMR3 200 aa5.3□□□□□ -1.56
SMARCB1-209ENST00000635578 PRKAR2AP13861 404 aaKnown RBP5.3□□□□□ -1.56
SMARCB1-209ENST00000635578 SPDYE1Q8NFV5 336 aaPredicted RBP5.27□□□□□ -1.57
SMARCB1-209ENST00000635578 MKRN4PQ13434 485 aaPredicted RBP5.26□□□□□ -1.57
SMARCB1-209ENST00000635578 ZNF692Q9BU19 519 aaPredicted RBP5.26□□□□□ -1.57
SMARCB1-209ENST00000635578 C19orf67A6NJJ6 358 aa5.22□□□□□ -1.57
SMARCB1-209ENST00000635578 CHADLQ6NUI6 762 aa5.22□□□□□ -1.57
SMARCB1-209ENST00000635578 SSUH2Q9Y2M2 353 aa5.22□□□□□ -1.57
SMARCB1-209ENST00000635578 GABBR2O75899 941 aa5.19□□□□□ -1.58
SMARCB1-209ENST00000635578 PABPN1Q86U42 306 aaKnown RBP eCLIP5.19□□□□□ -1.58
SMARCB1-209ENST00000635578 PRR29P0C7W0 189 aa5.17□□□□□ -1.58
SMARCB1-209ENST00000635578 LHX8Q68G74 356 aa5.14□□□□□ -1.59
SMARCB1-209ENST00000635578 CD44P16070 742 aaKnown RBP5.12□□□□□ -1.59
SMARCB1-209ENST00000635578 FARP1Q9Y4F1 1045 aaPredicted RBP5.1□□□□□ -1.59
SMARCB1-209ENST00000635578 POTEIP0CG38 1075 aa5.07□□□□□ -1.6
SMARCB1-209ENST00000635578 DCBLD2Q96PD2 775 aa5.05□□□□□ -1.6
SMARCB1-209ENST00000635578 ZRANB1Q9UGI0 708 aa5.03□□□□□ -1.6
SMARCB1-209ENST00000635578 ZNF579Q8NAF0 562 aaKnown RBP5□□□□□ -1.61
SMARCB1-209ENST00000635578 PLSCR2Q9NRY7 297 aa5□□□□□ -1.61
SMARCB1-209ENST00000635578 CREBZFQ9NS37 354 aa5□□□□□ -1.61
SMARCB1-209ENST00000635578 CSRNP3Q8WYN3 585 aa4.99□□□□□ -1.61
SMARCB1-209ENST00000635578 GALR2O43603 387 aaPredicted RBP4.98□□□□□ -1.61
SMARCB1-209ENST00000635578 CLCN6P51797 869 aa4.98□□□□□ -1.61
SMARCB1-209ENST00000635578 PHF12Q96QT6 1004 aa4.97□□□□□ -1.61
SMARCB1-209ENST00000635578 STAG3Q9UJ98 1225 aa4.96□□□□□ -1.62
SMARCB1-209ENST00000635578 SPDYE4A6NLX3 237 aa4.95□□□□□ -1.62
SMARCB1-209ENST00000635578 PAK3O75914 559 aaPredicted RBP4.95□□□□□ -1.62
SMARCB1-209ENST00000635578 EHMT2Q96KQ7 1210 aa4.94□□□□□ -1.62
SMARCB1-209ENST00000635578 OTUD5Q96G74 571 aa4.92□□□□□ -1.62
SMARCB1-209ENST00000635578 POTEB2H3BUK9 544 aa4.91□□□□□ -1.62
SMARCB1-209ENST00000635578 NPM1P06748 294 aaKnown RBP eCLIP4.9□□□□□ -1.63
SMARCB1-209ENST00000635578 PELP1Q8IZL8 1130 aaKnown RBP4.89□□□□□ -1.63
SMARCB1-209ENST00000635578 MNX1P50219 401 aaPredicted RBP4.87□□□□□ -1.63
SMARCB1-209ENST00000635578 MS4A3Q96HJ5 214 aa4.87□□□□□ -1.63
SMARCB1-209ENST00000635578 POTEMA6NI47 508 aa4.86□□□□□ -1.63
SMARCB1-209ENST00000635578 TSPYL2Q9H2G4 693 aaPredicted RBP4.86□□□□□ -1.63
SMARCB1-209ENST00000635578 METRNQ9UJH8 293 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms