RNA–Protein interactions for RNA: ENST00000627185.1

CHD2-209, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 3

Gene CHD2, Length 533 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-209ENST00000627185 AEBP2Q6ZN18 517 aaPredicted RBP23.82■■□□□ 1.4
CHD2-209ENST00000627185 CHIC1Q5VXU3 224 aa23.58■■□□□ 1.37
CHD2-209ENST00000627185 PHF23Q9BUL5 403 aaPredicted RBP20.77■□□□□ 0.92
CHD2-209ENST00000627185 SENP3Q9H4L4 574 aaPredicted RBP20.16■□□□□ 0.82
CHD2-209ENST00000627185 PLPPR3Q6T4P5 718 aa19.28■□□□□ 0.68
CHD2-209ENST00000627185 FOXD1Q16676 465 aa18.66■□□□□ 0.58
CHD2-209ENST00000627185 PPP6R1Q9UPN7 881 aa18.21■□□□□ 0.51
CHD2-209ENST00000627185 ADRA2BP18089 450 aa18.19■□□□□ 0.5
CHD2-209ENST00000627185 NISCHQ9Y2I1 1504 aa18.11■□□□□ 0.49
CHD2-209ENST00000627185 PIAS4Q8N2W9 510 aaPredicted RBP17.65■□□□□ 0.42
CHD2-209ENST00000627185 MSH5O43196 834 aa17.09■□□□□ 0.33
CHD2-209ENST00000627185 PPP4R3CPQ6ZMV5 832 aa17.02■□□□□ 0.32
CHD2-209ENST00000627185 KCNA4P22459 653 aa17■□□□□ 0.31
CHD2-209ENST00000627185 NCBP3Q53F19 620 aaKnown RBP16.67■□□□□ 0.26
CHD2-209ENST00000627185 SCAF1Q9H7N4 1312 aaKnown RBP16.66■□□□□ 0.26
CHD2-209ENST00000627185 CNKSR2Q8WXI2 1034 aa16.49■□□□□ 0.23
CHD2-209ENST00000627185 NPM3O75607 178 aaKnown RBP16.44■□□□□ 0.22
CHD2-209ENST00000627185 MAPK8IP2Q13387 824 aaPredicted RBP16.4■□□□□ 0.22
CHD2-209ENST00000627185 SLC4A1APQ9BWU0 796 aaKnown RBP16.24■□□□□ 0.19
CHD2-209ENST00000627185 DMRT2Q9Y5R5 561 aa16.16■□□□□ 0.18
CHD2-209ENST00000627185 EHMT2Q96KQ7 1210 aa16.11■□□□□ 0.17
CHD2-209ENST00000627185 RNF216Q9NWF9 866 aaPredicted RBP16.1■□□□□ 0.17
CHD2-209ENST00000627185 DNAJC5BQ9UF47 199 aa16.01■□□□□ 0.15
CHD2-209ENST00000627185 HOXD11P31277 338 aaPredicted RBP15.96■□□□□ 0.15
CHD2-209ENST00000627185 CSRNP3Q8WYN3 585 aa15.83■□□□□ 0.12
CHD2-209ENST00000627185 ZBTB22O15209 634 aa15.65■□□□□ 0.1
CHD2-209ENST00000627185 CCDC180Q9P1Z9 1646 aa15.59■□□□□ 0.09
CHD2-209ENST00000627185 POTEDQ86YR6 584 aa15.58■□□□□ 0.08
CHD2-209ENST00000627185 FOXD4L1Q9NU39 408 aa15.56■□□□□ 0.08
CHD2-209ENST00000627185 SLC4A2P04920 1241 aa15.45■□□□□ 0.06
CHD2-209ENST00000627185 DCAF8L1A6NGE4 600 aa15.35■□□□□ 0.05
CHD2-209ENST00000627185 ZCCHC6Q5VYS8 1495 aaKnown RBP15.33■□□□□ 0.05
CHD2-209ENST00000627185 MYCNP04198 464 aaPredicted RBP15.18■□□□□ 0.02
CHD2-209ENST00000627185 DCAF1Q9Y4B6 1507 aa15.17■□□□□ 0.02
CHD2-209ENST00000627185 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.15■□□□□ 0.021e-8■■□□□ 11.8
CHD2-209ENST00000627185 ATXN8OSP0DMR3 200 aa15.02■□□□□ -0
CHD2-209ENST00000627185 U3KPZ7 1027 aaPredicted RBP14.98□□□□□ -0.01
CHD2-209ENST00000627185 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.9□□□□□ -0.02
CHD2-209ENST00000627185 HNRNPUL2Q1KMD3 747 aaKnown RBP14.9□□□□□ -0.02
CHD2-209ENST00000627185 SAMD1Q6SPF0 538 aaPredicted RBP14.86□□□□□ -0.03
CHD2-209ENST00000627185 MYO15BQ96JP2 1530 aa14.86□□□□□ -0.03
CHD2-209ENST00000627185 SHROOM4Q9ULL8 1493 aa14.74□□□□□ -0.05
CHD2-209ENST00000627185 ATF5Q9Y2D1 282 aaPredicted RBP14.73□□□□□ -0.05
CHD2-209ENST00000627185 RNF39Q9H2S5 420 aa14.68□□□□□ -0.06
CHD2-209ENST00000627185 APLP2Q06481 763 aa14.67□□□□□ -0.06
CHD2-209ENST00000627185 C1QBPQ07021 282 aaKnown RBP14.53□□□□□ -0.08
CHD2-209ENST00000627185 ZNF219Q9P2Y4 722 aaPredicted RBP14.49□□□□□ -0.09
CHD2-209ENST00000627185 SUPT5HO00267 1087 aaKnown RBP14.47□□□□□ -0.09
CHD2-209ENST00000627185 NACADO15069 1562 aa14.44□□□□□ -0.1
CHD2-209ENST00000627185 SPINK5Q9NQ38 1064 aaPredicted RBP14.44□□□□□ -0.1
CHD2-209ENST00000627185 DCAF8L2P0C7V8 631 aa14.42□□□□□ -0.1
CHD2-209ENST00000627185 ABCC9O60706 1549 aa14.4□□□□□ -0.1
CHD2-209ENST00000627185 CAPN15O75808 1086 aa14.35□□□□□ -0.11
CHD2-209ENST00000627185 TRHP20396 242 aaPredicted RBP14.35□□□□□ -0.11
CHD2-209ENST00000627185 FKBP8Q14318 412 aa14.26□□□□□ -0.13
CHD2-209ENST00000627185 RSF1Q96T23 1441 aaPredicted RBP14.22□□□□□ -0.13
CHD2-209ENST00000627185 POLA2Q14181 598 aa14.21□□□□□ -0.13
CHD2-209ENST00000627185 SCRIBQ14160 1630 aa14.16□□□□□ -0.14
CHD2-209ENST00000627185 MKRN4PQ13434 485 aaPredicted RBP14.14□□□□□ -0.15
CHD2-209ENST00000627185 RB1CC1Q8TDY2 1594 aa14.12□□□□□ -0.15
CHD2-209ENST00000627185 ABCB7O75027 752 aa14.1□□□□□ -0.15
CHD2-209ENST00000627185 FBLN2P98095 1184 aa14.09□□□□□ -0.15
CHD2-209ENST00000627185 DSG3P32926 999 aa14.08□□□□□ -0.16
CHD2-209ENST00000627185 ZBTB12Q9Y330 459 aaPredicted RBP14.04□□□□□ -0.16
CHD2-209ENST00000627185 CACNB1Q02641 598 aaPredicted RBP14.01□□□□□ -0.17
CHD2-209ENST00000627185 SPDYE4A6NLX3 237 aa13.95□□□□□ -0.18
CHD2-209ENST00000627185 BAZ1AQ9NRL2 1556 aaPredicted RBP13.95□□□□□ -0.18
CHD2-209ENST00000627185 MROH2BQ7Z745 1585 aa13.92□□□□□ -0.18
CHD2-209ENST00000627185 CECR2Q9BXF3 1484 aa13.91□□□□□ -0.18
CHD2-209ENST00000627185 PROM2Q8N271 834 aa13.83□□□□□ -0.2
CHD2-209ENST00000627185 TOP2AP11388 1531 aaKnown RBP13.77□□□□□ -0.21
CHD2-209ENST00000627185 SMARCA4P51532 1647 aa13.75□□□□□ -0.21
CHD2-209ENST00000627185 EIF4G1Q04637 1599 aaKnown RBP13.75□□□□□ -0.21
CHD2-209ENST00000627185 WIZO95785 1651 aa13.74□□□□□ -0.21
CHD2-209ENST00000627185 PEG3Q9GZU2 1588 aa13.74□□□□□ -0.21
CHD2-209ENST00000627185 OSCARQ8IYS5 282 aa13.73□□□□□ -0.21
CHD2-209ENST00000627185 TRIM41Q8WV44 630 aa13.71□□□□□ -0.21
CHD2-209ENST00000627185 SPDYE2BA6NHP3 402 aa13.69□□□□□ -0.22
CHD2-209ENST00000627185 SPDYE6P0CI01 402 aa13.69□□□□□ -0.22
CHD2-209ENST00000627185 SPDYE2Q495Y8 402 aa13.69□□□□□ -0.22
CHD2-209ENST00000627185 FBXO3Q9UK99 471 aa13.69□□□□□ -0.22
CHD2-209ENST00000627185 UNC13AQ9UPW8 1703 aa13.69□□□□□ -0.22
CHD2-209ENST00000627185 BICRAQ9NZM4 1560 aa13.67□□□□□ -0.22
CHD2-209ENST00000627185 HRCP23327 699 aa13.66□□□□□ -0.22
CHD2-209ENST00000627185 ZNF692Q9BU19 519 aaPredicted RBP13.65□□□□□ -0.22
CHD2-209ENST00000627185 SSUH2Q9Y2M2 353 aa13.64□□□□□ -0.23
CHD2-209ENST00000627185 LOC105371045A0A1W2PR82 267 aa13.61□□□□□ -0.23
CHD2-209ENST00000627185 SMARCA2P51531 1590 aa13.61□□□□□ -0.23
CHD2-209ENST00000627185 AMER1Q5JTC6 1135 aaPredicted RBP13.59□□□□□ -0.23
CHD2-209ENST00000627185 CCDC88BA6NC98 1476 aa13.59□□□□□ -0.23
CHD2-209ENST00000627185 TRIM26Q12899 539 aaPredicted RBP13.57□□□□□ -0.24
CHD2-209ENST00000627185 EEA1Q15075 1411 aa13.56□□□□□ -0.24
CHD2-209ENST00000627185 RTN4Q9NQC3 1192 aaKnown RBP13.54□□□□□ -0.24
CHD2-209ENST00000627185 VASPP50552 380 aaPredicted RBP13.5□□□□□ -0.25
CHD2-209ENST00000627185 PABPN1Q86U42 306 aaKnown RBP eCLIP13.49□□□□□ -0.25
CHD2-209ENST00000627185 PCGF6Q9BYE7 350 aa13.49□□□□□ -0.25
CHD2-209ENST00000627185 ATAD2BQ9ULI0 1458 aa13.47□□□□□ -0.25
CHD2-209ENST00000627185 WRNQ14191 1432 aaPredicted RBP eCLIP13.41□□□□□ -0.26
CHD2-209ENST00000627185 RBM42Q9BTD8 480 aaKnown RBP13.4□□□□□ -0.26
CHD2-209ENST00000627185 STAG3Q9UJ98 1225 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 125 ms