RNA–Protein interactions for RNA: ENST00000625402.1

SCARNA4-202, small Cajal body-specific RNA 4, humanhuman

BASIC

Gene SCARNA4, Length 129 nt, Biotype scaRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARNA4-202ENST00000625402 AEBP2Q6ZN18 517 aaPredicted RBP12.8□□□□□ -0.36
SCARNA4-202ENST00000625402 CHIC1Q5VXU3 224 aa12.66□□□□□ -0.38
SCARNA4-202ENST00000625402 PHF23Q9BUL5 403 aaPredicted RBP11.21□□□□□ -0.61
SCARNA4-202ENST00000625402 SENP3Q9H4L4 574 aaPredicted RBP10.71□□□□□ -0.69
SCARNA4-202ENST00000625402 PLPPR3Q6T4P5 718 aa10.33□□□□□ -0.76
SCARNA4-202ENST00000625402 FOXD1Q16676 465 aa9.98□□□□□ -0.81
SCARNA4-202ENST00000625402 PPP6R1Q9UPN7 881 aa9.82□□□□□ -0.84
SCARNA4-202ENST00000625402 ADRA2BP18089 450 aa9.8□□□□□ -0.84
SCARNA4-202ENST00000625402 PIAS4Q8N2W9 510 aaPredicted RBP9.44□□□□□ -0.9
SCARNA4-202ENST00000625402 KCNA4P22459 653 aa9.28□□□□□ -0.92
SCARNA4-202ENST00000625402 PPP4R3CPQ6ZMV5 832 aa9.17□□□□□ -0.94
SCARNA4-202ENST00000625402 MSH5O43196 834 aa9.11□□□□□ -0.95
SCARNA4-202ENST00000625402 NPM3O75607 178 aaKnown RBP8.9□□□□□ -0.98
SCARNA4-202ENST00000625402 NCBP3Q53F19 620 aaKnown RBP8.9□□□□□ -0.98
SCARNA4-202ENST00000625402 EHMT2Q96KQ7 1210 aa8.88□□□□□ -0.99
SCARNA4-202ENST00000625402 MAPK8IP2Q13387 824 aaPredicted RBP8.83□□□□□ -1
SCARNA4-202ENST00000625402 CNKSR2Q8WXI2 1034 aa8.82□□□□□ -1
SCARNA4-202ENST00000625402 SLC4A1APQ9BWU0 796 aaKnown RBP8.82□□□□□ -1
SCARNA4-202ENST00000625402 SCAF1Q9H7N4 1312 aaKnown RBP8.81□□□□□ -1
SCARNA4-202ENST00000625402 CSRNP3Q8WYN3 585 aa8.69□□□□□ -1.02
SCARNA4-202ENST00000625402 DMRT2Q9Y5R5 561 aa8.62□□□□□ -1.03
SCARNA4-202ENST00000625402 ZBTB22O15209 634 aa8.6□□□□□ -1.03
SCARNA4-202ENST00000625402 RNF216Q9NWF9 866 aaPredicted RBP8.6□□□□□ -1.03
SCARNA4-202ENST00000625402 DNAJC5BQ9UF47 199 aa8.56□□□□□ -1.04
SCARNA4-202ENST00000625402 HOXD11P31277 338 aaPredicted RBP8.54□□□□□ -1.04
SCARNA4-202ENST00000625402 FOXD4L1Q9NU39 408 aa8.41□□□□□ -1.06
SCARNA4-202ENST00000625402 SLC4A2P04920 1241 aa8.37□□□□□ -1.07
SCARNA4-202ENST00000625402 POTEDQ86YR6 584 aa8.27□□□□□ -1.09
SCARNA4-202ENST00000625402 DCAF8L1A6NGE4 600 aa8.19□□□□□ -1.1
SCARNA4-202ENST00000625402 MYCNP04198 464 aaPredicted RBP8.17□□□□□ -1.1
SCARNA4-202ENST00000625402 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.08□□□□□ -1.12
SCARNA4-202ENST00000625402 U3KPZ7 1027 aaPredicted RBP8.07□□□□□ -1.12
SCARNA4-202ENST00000625402 ATXN8OSP0DMR3 200 aa8.05□□□□□ -1.12
SCARNA4-202ENST00000625402 ATF5Q9Y2D1 282 aaPredicted RBP8.02□□□□□ -1.13
SCARNA4-202ENST00000625402 SAMD1Q6SPF0 538 aaPredicted RBP7.92□□□□□ -1.14
SCARNA4-202ENST00000625402 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.9□□□□□ -1.14
SCARNA4-202ENST00000625402 HNRNPUL2Q1KMD3 747 aaKnown RBP7.9□□□□□ -1.14
SCARNA4-202ENST00000625402 RNF39Q9H2S5 420 aa7.81□□□□□ -1.16
SCARNA4-202ENST00000625402 FKBP8Q14318 412 aa7.8□□□□□ -1.16
SCARNA4-202ENST00000625402 SPINK5Q9NQ38 1064 aaPredicted RBP7.78□□□□□ -1.16
SCARNA4-202ENST00000625402 ZNF219Q9P2Y4 722 aaPredicted RBP7.78□□□□□ -1.16
SCARNA4-202ENST00000625402 APLP2Q06481 763 aa7.73□□□□□ -1.17
SCARNA4-202ENST00000625402 C1QBPQ07021 282 aaKnown RBP7.71□□□□□ -1.18
SCARNA4-202ENST00000625402 TRHP20396 242 aaPredicted RBP7.69□□□□□ -1.18
SCARNA4-202ENST00000625402 MKRN4PQ13434 485 aaPredicted RBP7.68□□□□□ -1.18
SCARNA4-202ENST00000625402 CAPN15O75808 1086 aa7.66□□□□□ -1.18
SCARNA4-202ENST00000625402 POLA2Q14181 598 aa7.62□□□□□ -1.19
SCARNA4-202ENST00000625402 CACNB1Q02641 598 aaPredicted RBP7.6□□□□□ -1.19
SCARNA4-202ENST00000625402 ABCB7O75027 752 aa7.58□□□□□ -1.2
SCARNA4-202ENST00000625402 RTN4Q9NQC3 1192 aaKnown RBP7.57□□□□□ -1.2
SCARNA4-202ENST00000625402 SPDYE4A6NLX3 237 aa7.54□□□□□ -1.2
SCARNA4-202ENST00000625402 FBLN2P98095 1184 aa7.53□□□□□ -1.2
SCARNA4-202ENST00000625402 DSG3P32926 999 aa7.52□□□□□ -1.21
SCARNA4-202ENST00000625402 PROM2Q8N271 834 aa7.51□□□□□ -1.21
SCARNA4-202ENST00000625402 AMER1Q5JTC6 1135 aaPredicted RBP7.47□□□□□ -1.21
SCARNA4-202ENST00000625402 ZBTB12Q9Y330 459 aaPredicted RBP7.45□□□□□ -1.22
SCARNA4-202ENST00000625402 OSCARQ8IYS5 282 aa7.41□□□□□ -1.22
SCARNA4-202ENST00000625402 FBXO3Q9UK99 471 aa7.36□□□□□ -1.23
SCARNA4-202ENST00000625402 VASPP50552 380 aaPredicted RBP7.35□□□□□ -1.23
SCARNA4-202ENST00000625402 SSUH2Q9Y2M2 353 aa7.33□□□□□ -1.24
SCARNA4-202ENST00000625402 SPDYE2BA6NHP3 402 aa7.31□□□□□ -1.24
SCARNA4-202ENST00000625402 SPDYE6P0CI01 402 aa7.31□□□□□ -1.24
SCARNA4-202ENST00000625402 SPDYE2Q495Y8 402 aa7.31□□□□□ -1.24
SCARNA4-202ENST00000625402 ZNF692Q9BU19 519 aaPredicted RBP7.31□□□□□ -1.24
SCARNA4-202ENST00000625402 IFNLR1Q8IU57 520 aaPredicted RBP7.29□□□□□ -1.24
SCARNA4-202ENST00000625402 PABPN1Q86U42 306 aaKnown RBP eCLIP7.26□□□□□ -1.25
SCARNA4-202ENST00000625402 SLC24A1O60721 1099 aa7.17□□□□□ -1.26
SCARNA4-202ENST00000625402 PKD2Q13563 968 aa7.15□□□□□ -1.26
SCARNA4-202ENST00000625402 STAG3Q9UJ98 1225 aa7.14□□□□□ -1.27
SCARNA4-202ENST00000625402 PLCD3Q8N3E9 789 aa7.1□□□□□ -1.27
SCARNA4-202ENST00000625402 KLHL34Q8N239 644 aa7.09□□□□□ -1.27
SCARNA4-202ENST00000625402 SPOCK2Q92563 424 aa7.09□□□□□ -1.27
SCARNA4-202ENST00000625402 RBM42Q9BTD8 480 aaKnown RBP7.09□□□□□ -1.27
SCARNA4-202ENST00000625402 MIER1Q8N108 512 aa7.08□□□□□ -1.28
SCARNA4-202ENST00000625402 AKT1S1Q96B36 256 aa7.06□□□□□ -1.28
SCARNA4-202ENST00000625402 REM2Q8IYK8 340 aaPredicted RBP7.03□□□□□ -1.28
SCARNA4-202ENST00000625402 SPDYE1Q8NFV5 336 aaPredicted RBP7.01□□□□□ -1.29
SCARNA4-202ENST00000625402 ECM2O94769 699 aaPredicted RBP7□□□□□ -1.29
SCARNA4-202ENST00000625402 DCAF8L2P0C7V8 631 aa7□□□□□ -1.29
SCARNA4-202ENST00000625402 CLEC11AQ9Y240 323 aa6.99□□□□□ -1.29
SCARNA4-202ENST00000625402 PITPNM1O00562 1244 aa6.98□□□□□ -1.29
SCARNA4-202ENST00000625402 RGL2O15211 777 aa6.98□□□□□ -1.29
SCARNA4-202ENST00000625402 MNX1P50219 401 aaPredicted RBP6.98□□□□□ -1.29
SCARNA4-202ENST00000625402 CREBZFQ9NS37 354 aa6.98□□□□□ -1.29
SCARNA4-202ENST00000625402 ZBTB47Q9UFB7 747 aaPredicted RBP6.96□□□□□ -1.3
SCARNA4-202ENST00000625402 PLEKHG5O94827 1062 aa6.95□□□□□ -1.3
SCARNA4-202ENST00000625402 NUBP1P53384 320 aa6.95□□□□□ -1.3
SCARNA4-202ENST00000625402 PLCB2Q00722 1185 aa6.95□□□□□ -1.3
SCARNA4-202ENST00000625402 NPM1P06748 294 aaKnown RBP eCLIP6.94□□□□□ -1.3
SCARNA4-202ENST00000625402 PRR29P0C7W0 189 aa6.94□□□□□ -1.3
SCARNA4-202ENST00000625402 CIZ1Q9ULV3 898 aaPredicted RBP6.94□□□□□ -1.3
SCARNA4-202ENST00000625402 RNF25Q96BH1 459 aaPredicted RBP6.91□□□□□ -1.3
SCARNA4-202ENST00000625402 RASEFQ8IZ41 740 aa6.89□□□□□ -1.31
SCARNA4-202ENST00000625402 CHADLQ6NUI6 762 aa6.86□□□□□ -1.31
SCARNA4-202ENST00000625402 GSE1Q14687 1217 aa6.85□□□□□ -1.31
SCARNA4-202ENST00000625402 TRIM41Q8WV44 630 aa6.84□□□□□ -1.31
SCARNA4-202ENST00000625402 BBXQ8WY36 941 aaPredicted RBP6.84□□□□□ -1.31
SCARNA4-202ENST00000625402 HAP1P54257 671 aaPredicted RBP6.83□□□□□ -1.32
SCARNA4-202ENST00000625402 DCAF8Q5TAQ9 597 aa6.83□□□□□ -1.32
SCARNA4-202ENST00000625402 FAM212AQ96EL1 285 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms